RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 RIPK1Q13546 671 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 ATXN7L3Q14CW9 347 aaPredicted RBP9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 RSU1Q15404 277 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 ELP2Q6IA86 826 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 LDLRAD3Q86YD5 345 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 DYNAPQ8N1N2 210 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 PXT1Q8NFP0 134 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 CNBD2Q96M20 576 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 TMED9Q9BVK6 235 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 PPIL3Q9H2H8 161 aaKnown RBP9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 DUSP21Q9H596 190 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 SCN3BQ9NY72 215 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 ZNRD1Q9P1U0 126 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 GLS2Q9UI32 602 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 SF3B6Q9Y3B4 125 aaKnown RBP9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 TRAV39A0A0B4J263 110 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 hADV38S2A0JD32 116 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 GPR137BO60478 399 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 GPX5O75715 221 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 MAS1P04201 325 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 FBP1P09467 338 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 IGHV1-8P0DP01 117 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 JUNBP17275 347 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 FSTP19883 344 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 CRHBPP24387 322 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 MTNR1BP49286 362 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 MEF2CQ06413 473 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 SPHARQ15513 63 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 PRAMEF5Q5TYX0 476 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 RNLSQ5VYX0 342 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 BRICD5Q6PL45 260 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 TBC1D15Q8TC07 691 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 MUL1Q969V5 352 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 ZNF714Q96N38 554 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 MND1Q9BWT6 205 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 CCDC90BQ9GZT6 254 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 HEXA-AS1Q9H8Q6 139 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 ZMAT3Q9HA38 289 aaKnown RBP9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 C1RLQ9NZP8 487 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 LINC00312Q9Y6C7 94 aa9.41□□□□□ -0.9
CCDC88C-208ENST00000554165 A0A1W2PPH5 198 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 FAM172BPA6NC97 362 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 PAHP00439 452 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 CD1AP06126 327 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 HSMCR30P0CW71 290 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 SERPINA2P20848 420 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 ACSM1Q08AH1 577 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 MED22Q15528 200 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 SLC22A6Q4U2R8 563 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 MIDNQ504T8 468 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 ACSM3Q53FZ2 586 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 PLA1AQ53H76 456 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 PAN3Q58A45 887 aaKnown RBP9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 LIPKQ5VXJ0 399 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 UNQ9370/PRO34162Q6UXP9 181 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 TRAPPC6BQ86SZ2 158 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 LYPD6Q86Y78 171 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 JAGN1Q8N5M9 183 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 C3orf56Q8N813 242 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 Q8NFD4 153 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 OR4D6Q8NGJ1 314 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 OR51T1Q8NGJ9 327 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 PLPPR1Q8TBJ4 325 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 TMEM203Q969S6 136 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 METTL9Q9H1A3 318 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 VCX3BQ9H321 246 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 RHOFQ9HBH0 211 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 CKLFQ9UBR5 152 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 TPRKBQ9Y3C4 175 aa9.4□□□□□ -0.9
CCDC88C-208ENST00000554165 hCG_1809904A0A1W2PP81 198 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 A0A1W2PPE2 198 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 A0A1W2PR64 198 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 A0A1W2PRV1 198 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 ODAMA1E959 279 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 ODF3BA8MYP8 253 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 H3BUX3 64 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 GEMIN2O14893 280 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 RGS10O43665 173 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 ARG1P05089 322 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 CDK2P24941 298 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 ERP29P30040 261 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 VHLP40337 213 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 RAB13P51153 203 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 RBM11P57052 281 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 RPS25P62851 125 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 BDH1Q02338 343 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 SRSF4Q08170 494 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 FOXL1Q12952 345 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 DYNC1I2Q13409 638 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 LY6EQ16553 131 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 KRBOX4Q5JUW0 171 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 GLIPR1L1Q6UWM5 242 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 OSR2Q8N2R0 312 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 TMEM86BQ8N661 226 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 CHST4Q8NCG5 386 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 BEND2Q8NDZ0 799 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 PPP1R35Q8TAP8 253 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 PIFOQ8TCI5 191 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 SSX3Q99909 188 aa9.39□□□□□ -0.91
CCDC88C-208ENST00000554165 BANF2Q9H503 90 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms