RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 OR6C3Q9NZP0 311 aa10.55□□□□□ -0.72
RTN3-213ENST00000543552 DEGS1O15121 323 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 MAGEB3O15480 346 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 TMEM225BP0DP42 221 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 CALCBP10092 127 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 CD28P10747 220 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 CD34P28906 385 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 MNDAP41218 407 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 MTNR1BP49286 362 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 PRRX1P54821 245 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 SCN1BQ07699 218 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 AESQ08117 197 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 RAB40BQ12829 278 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 KISS1Q15726 138 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 ZIK1Q3SY52 487 aaPredicted RBP10.54□□□□□ -0.72
RTN3-213ENST00000543552 KRBOX4Q5JUW0 171 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 CBR4Q8N4T8 237 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 OR51A4Q8NGJ6 313 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 OR10AC1Q8NH08 325 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 TSEN15Q8WW01 171 aaKnown RBP10.54□□□□□ -0.72
RTN3-213ENST00000543552 LGALS12Q96DT0 336 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 SPACA5Q96QH8 159 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 OR5M11Q96RB7 305 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 C9orf16Q9BUW7 83 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 PCDHB16Q9NRJ7 776 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 DHDHQ9UQ10 334 aa10.54□□□□□ -0.72
RTN3-213ENST00000543552 IGKV1-12A0A0C4DH73 117 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 ZNF729A6NN14 1252 aaPredicted RBP10.53□□□□□ -0.72
RTN3-213ENST00000543552 OOSP1A8MZH6 123 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 M0QZK8 103 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 IGKV1D-12P01611 117 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 GLIPR1P48060 266 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 GBX2P52951 348 aaPredicted RBP10.53□□□□□ -0.72
RTN3-213ENST00000543552 CCDC121Q6ZUS5 278 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 LHFPL3Q86UP9 236 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 PARP16Q8N5Y8 322 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 ZNF565Q8N9K5 539 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 OR5AK2Q8NH90 309 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 WIPF2Q8TF74 440 aaPredicted RBP10.53□□□□□ -0.72
RTN3-213ENST00000543552 CITED2Q99967 270 aaPredicted RBP10.53□□□□□ -0.72
RTN3-213ENST00000543552 MYRFQ9Y2G1 1151 aa10.53□□□□□ -0.72
RTN3-213ENST00000543552 AMMECR1Q9Y4X0 333 aaPredicted RBP10.53□□□□□ -0.72
RTN3-213ENST00000543552 E9PQ18 207 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 H3BNX3 289 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 SLC33A1O00400 549 aaPredicted RBP10.52□□□□□ -0.73
RTN3-213ENST00000543552 MMP23AO75900 390 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 OR2F2O95006 317 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 ZFPL1O95159 310 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 IGLV1-47P01700 117 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 CD2P06729 351 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 RAB3AP20336 220 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 BLCAPP62952 87 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 ATXN7L3Q14CW9 347 aaPredicted RBP10.52□□□□□ -0.73
RTN3-213ENST00000543552 HLA-DRB5Q30154 266 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 KLHL22Q53GT1 634 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 ZNF691Q5VV52 312 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 LYG1Q8N1E2 194 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 PXT1Q8NFP0 134 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 GPER1Q99527 375 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 MMP28Q9H239 520 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 ERVK13-1Q9NX77 482 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 RPL36Q9Y3U8 105 aaKnown RBP10.52□□□□□ -0.73
RTN3-213ENST00000543552 PLXNB1O43157 2135 aa10.52□□□□□ -0.73
RTN3-213ENST00000543552 A0A087X0M5 115 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 KBTBD11-OT1A0A1B0GTJ5 212 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 A0A1B0GX30 115 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 H0YJX3 145 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 BUB1B-PAK6H3BSN5 160 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 PF4V1P10720 104 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 JUNBP17275 347 aaPredicted RBP10.51□□□□□ -0.73
RTN3-213ENST00000543552 C21orf33P30042 268 aaPredicted RBP10.51□□□□□ -0.73
RTN3-213ENST00000543552 KCNJ3P48549 501 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 ZP1P60852 638 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 RBM39Q14498 530 aaKnown RBP10.51□□□□□ -0.73
RTN3-213ENST00000543552 FBLN7Q53RD9 439 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 PAN3Q58A45 887 aaKnown RBP10.51□□□□□ -0.73
RTN3-213ENST00000543552 TPTE2P1Q5T6R2 138 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 HIST2H2BDQ6DRA6 164 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 ELP2Q6IA86 826 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 Q6P435 159 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 CENPVQ7Z7K6 275 aaPredicted RBP10.51□□□□□ -0.73
RTN3-213ENST00000543552 OR5AU1Q8NGC0 362 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 OR4X2Q8NGF9 303 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 OR51T1Q8NGJ9 327 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 OR9G1Q8NH87 305 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 RHOXF1Q8NHV9 184 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 RBM14Q96PK6 669 aaKnown RBP10.51□□□□□ -0.73
RTN3-213ENST00000543552 OCSTAMPQ9BR26 566 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 SLC25A33Q9BSK2 321 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 BARHL1Q9BZE3 327 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 NCOR1P1Q9H4R4 102 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 ISG20L2Q9H9L3 353 aaKnown RBP10.51□□□□□ -0.73
RTN3-213ENST00000543552 ZNF286AQ9HBT8 521 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 NECAP2Q9NVZ3 263 aa10.51□□□□□ -0.73
RTN3-213ENST00000543552 NOTCH3Q9UM47 2321 aa10.5□□□□□ -0.73
RTN3-213ENST00000543552 LOC100130705A0A1B0GUX0 176 aa10.5□□□□□ -0.73
RTN3-213ENST00000543552 FAM172BPA6NC97 362 aa10.5□□□□□ -0.73
RTN3-213ENST00000543552 PIN1P1O15428 100 aa10.5□□□□□ -0.73
RTN3-213ENST00000543552 CLIC3O95833 236 aa10.5□□□□□ -0.73
RTN3-213ENST00000543552 FAM106CPP0CH98 169 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms