RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 UBALD1Q8TB05 177 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 METTL8Q9H825 291 aaKnown RBP12.35□□□□□ -0.43
CLIP1-216ENST00000541410 WASF3Q9UPY6 502 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 IQCF6A8MYZ5 107 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 J3QT63 122 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 M0R1B8 84 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 TIMM8AO60220 97 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF728P0DKX0 622 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 RCC1P18754 421 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-216ENST00000541410 AADACP22760 399 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 S100A11P31949 105 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 FAM27E3Q08E93 113 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 P2RY6Q15077 328 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 VHLLQ6RSH7 139 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 OR10C1Q96KK4 312 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 PURGQ9UJV8 347 aaKnown RBP12.34□□□□□ -0.43
CLIP1-216ENST00000541410 SLC25A15Q9Y619 301 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 DIDO1Q9BTC0 2240 aaKnown RBP12.34□□□□□ -0.43
CLIP1-216ENST00000541410 SPTA1P02549 2419 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 WNT9BO14905 357 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 CD8AP01732 235 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 PRAMEF6Q5VXH4 476 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 DHRS11Q6UWP2 260 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 GSG1LQ6UXU4 331 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 Q6ZR03 302 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 FAM57AQ8TBR7 257 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 GTF3AQ92664 365 aaKnown RBP12.34□□□□□ -0.43
CLIP1-216ENST00000541410 GSKIPQ9P0R6 139 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 RCC2Q9P258 522 aaKnown RBP12.34□□□□□ -0.43
CLIP1-216ENST00000541410 OR14J1Q9UGF5 321 aa12.34□□□□□ -0.43
CLIP1-216ENST00000541410 NBASA2RRP1 2371 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 HMSDA8MTL9 139 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 MSMPQ1L6U9 139 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 MPV17LQ2QL34 196 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 C11orf87Q6NUJ2 197 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 LPCAT3Q6P1A2 487 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 LRP11Q86VZ4 500 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 FOXRED2Q8IWF2 684 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 Q9N2K0 584 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 TMEM100Q9NV29 134 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 MBD2Q9UBB5 411 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 DUSP13Q9UII6 198 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 LRP5LA4QPB2 252 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 A6NLC8 198 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 J3QW42 95 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 DEGS1O15121 323 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 NXPH2O95156 264 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 NAPSAO96009 420 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 IGLV1-44P01699 117 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 HOXB1P14653 301 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-216ENST00000541410 HERPUD1Q15011 391 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 ABCA11PQ4W5N1 156 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 NHLRC3Q5JS37 347 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 ALKAL2Q6UX46 152 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 PRR18Q8N4B5 295 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 COQ8AQ8NI60 647 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 PKIBQ9C010 78 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 ITGB1BP2Q9UKP3 347 aa12.33□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A10PA6NDY2 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A18PA6NE21 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A16PA6NEW6 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A20PA6NIJ5 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A8PA6NJQ4 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A7PA6NKC0 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 POM121CA8CG34 1229 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A22PA8MWA6 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A12PA8MX19 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A5PA8MXJ8 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A23PA8MXZ1 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 SPDEFO95238 335 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 IFNA2P01563 188 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A15PP0C7V4 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A13PP0C7W8 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A14PP0C7W9 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM90A24PP0C7X0 464 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 HLA-GP17693 338 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 FAM76BQ5HYJ3 339 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 DOLPP1Q86YN1 238 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 SGPP2Q8IWX5 399 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 OR8G5Q8NG78 346 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 MEX3AA1L020 520 aaKnown RBP12.32□□□□□ -0.44
CLIP1-216ENST00000541410 K7ENP7 123 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 OR2H2O95918 312 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 CTSDP07339 412 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-216ENST00000541410 OR5AC1P0C628 307 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 GLP1RP43220 463 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 NAAAQ02083 359 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 SURF2Q15527 256 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-216ENST00000541410 KRTCAP3Q53RY4 240 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 ZNF324BQ6AW86 544 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-216ENST00000541410 MRPL30Q8TCC3 161 aaKnown RBP12.32□□□□□ -0.44
CLIP1-216ENST00000541410 RTN4IP1Q8WWV3 396 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-216ENST00000541410 SLC2A9Q9NRM0 540 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 SSUH2Q9Y2M2 353 aa12.32□□□□□ -0.44
CLIP1-216ENST00000541410 ATRXP46100 2492 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 IGKV1-6A0A0C4DH72 117 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 CRYM-AS1A6NIL9 109 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 PPYP01298 95 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 GCH1P30793 250 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 TIMP3P35625 211 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms