RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 RUNX1Q01196 453 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 KISS1Q15726 138 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 SLC25A47Q6Q0C1 308 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 DOK3Q7L591 496 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 LFNGQ8NES3 379 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 DYRK2Q92630 601 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 RBM14Q96PK6 669 aaKnown RBP12.32□□□□□ -0.44
USP48-213ENST00000529637 DCAF16Q9NXF7 216 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 WSB1Q9Y6I7 421 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 ELOA3CA0A087WX78 387 aaPredicted RBP12.32□□□□□ -0.44
USP48-213ENST00000529637 SMCO3A2RU48 225 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 FAM221AA4D161 298 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 C9J4A7 227 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 SCAF4O95104 1147 aaKnown RBP12.32□□□□□ -0.44
USP48-213ENST00000529637 ONECUT2O95948 504 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 EPHA8P29322 1005 aaPredicted RBP12.32□□□□□ -0.44
USP48-213ENST00000529637 EWSR1Q01844 656 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP48-213ENST00000529637 BRICD5Q6PL45 260 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 RTN4IP1Q8WWV3 396 aaPredicted RBP12.32□□□□□ -0.44
USP48-213ENST00000529637 TVP23CQ96ET8 276 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 TMEM68Q96MH6 324 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 UCN2Q96RP3 112 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 KNTC1P50748 2209 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 IL18BPO95998 194 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 IFNA10P01566 189 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 COX5BP10606 129 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 HIST2H3PS2Q5TEC6 136 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 GPR157Q5UAW9 335 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 ZNF880Q6PDB4 577 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 M1APQ8TC57 530 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 ZNF385AQ96PM9 386 aaKnown RBP12.32□□□□□ -0.44
USP48-213ENST00000529637 DUSP23Q9BVJ7 150 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 DKKL1Q9UK85 242 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 HSF4Q9ULV5 492 aa12.32□□□□□ -0.44
USP48-213ENST00000529637 CCDC187A0A096LP49 1063 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 CCDC85CA6NKD9 419 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 EPHA1P21709 976 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 SSC4DQ8WTU2 575 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 NIPSNAP3BQ9BS92 247 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 MRPL37Q9BZE1 423 aaKnown RBP12.31□□□□□ -0.44
USP48-213ENST00000529637 CYTIPO60759 359 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 MSR1P21757 451 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 PIGLQ9Y2B2 252 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 TP53TG5Q9Y2B4 290 aa12.31□□□□□ -0.44
USP48-213ENST00000529637 IGSF23A1L1A6 192 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 AQP7P3A6NL99 342 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 TOX3O15405 576 aaPredicted RBP12.3□□□□□ -0.44
USP48-213ENST00000529637 GRB2P62993 217 aaKnown RBP12.3□□□□□ -0.44
USP48-213ENST00000529637 C20orf196Q8IYI0 205 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 FBXL14Q8N1E6 418 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 BOD1Q96IK1 185 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 FAAP24Q9BTP7 215 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 MKRN2OSH3BPM6 223 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 ST8SIA3O43173 380 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 SOX15O60248 233 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 NUTF2P61970 127 aaKnown RBP12.3□□□□□ -0.44
USP48-213ENST00000529637 MAGT1Q9H0U3 335 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 NAA60Q9H7X0 242 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 PLEKHJ1Q9NW61 149 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 ADAMTS9Q9P2N4 1935 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 SLC7A11Q9UPY5 501 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 COL5A1P20908 1838 aaPredicted RBP12.3□□□□□ -0.44
USP48-213ENST00000529637 CCL3P10147 92 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 HLA-BQ31612 363 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 MEX3BQ6ZN04 569 aaKnown RBP12.3□□□□□ -0.44
USP48-213ENST00000529637 TMEM123Q8N131 208 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 TMEM217Q8N7C4 229 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 GJC3Q8NFK1 279 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 ULBP2Q9BZM5 246 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 KIAA1456Q9P272 454 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 ANXA10Q9UJ72 324 aa12.3□□□□□ -0.44
USP48-213ENST00000529637 ZNF850A8MQ14 1090 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 ZNF705GA8MUZ8 300 aaPredicted RBP12.29□□□□□ -0.44
USP48-213ENST00000529637 CST7O76096 145 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 NXPH3O95157 252 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 C21orf62-AS1Q17RA5 79 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 SLC25A53Q5H9E4 307 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 MSI2Q96DH6 328 aaKnown RBP12.29□□□□□ -0.44
USP48-213ENST00000529637 C18orf12Q96KH6 178 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 CHCHD2Q9Y6H1 151 aaPredicted RBP12.29□□□□□ -0.44
USP48-213ENST00000529637 AMBPP02760 352 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 CD55P08174 381 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 ABCA11PQ4W5N1 156 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 PHYHD1Q5SRE7 291 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 THOC3Q96J01 351 aaKnown RBP12.29□□□□□ -0.44
USP48-213ENST00000529637 CALHM2Q9HA72 323 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 PNRC2Q9NPJ4 139 aaKnown RBP12.29□□□□□ -0.44
USP48-213ENST00000529637 OR14J1Q9UGF5 321 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 SIT1Q9Y3P8 196 aa12.29□□□□□ -0.44
USP48-213ENST00000529637 A0A1B0GWJ7 208 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 FAM230AA0A1W2PPH8 454 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 ANGPTL7O43827 346 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 ZNF728P0DKX0 622 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 MMP9P14780 707 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 PNLIPP16233 465 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 JOSD1Q15040 202 aaPredicted RBP12.28□□□□□ -0.44
USP48-213ENST00000529637 SP5Q6BEB4 398 aaPredicted RBP12.28□□□□□ -0.44
USP48-213ENST00000529637 SLC35G3Q8N808 338 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 OR5R1Q8NH85 324 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 OR2AE1Q8NHA4 323 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms