RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 LAMTOR5O43504 91 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 CD5LO43866 347 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 B4GALT2O60909 372 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 C1QL1O75973 258 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 CDS2O95674 445 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 EPPINO95925 133 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 MAS1P04201 325 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 BCL2P10415 239 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 PF4V1P10720 104 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 ERGP11308 486 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 LMO2P25791 158 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 PSMB5P28074 263 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 OR1D2P34982 312 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 GUCA1AP43080 201 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 LILRA4P59901 499 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 RPL15P61313 204 aaKnown RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 CCL20P78556 96 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 MFGE8Q08431 387 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 FUT5Q11128 374 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 HSPB3Q12988 150 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 NFATC4Q14934 902 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 EXOSC7Q15024 291 aaKnown RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 IAH1Q2TAA2 248 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 ACSF3Q4G176 576 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 ZNF776Q68DI1 518 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 AMMECR1LQ6DCA0 310 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 FAM166AQ6J272 317 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 CCDC144NLQ6NUI1 221 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 FBXL22Q6P050 247 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 FAM180AQ6UWF9 173 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 PLXDC2Q6UX71 529 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 C12orf54Q6X4T0 127 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 PAQR9Q6ZVX9 377 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 BHLHA9Q7RTU4 235 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 TRAPPC6BQ86SZ2 158 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 LRP11Q86VZ4 500 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 SERPINA9Q86WD7 417 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 MEX3DQ86XN8 651 aaKnown RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 CALHM1Q8IU99 346 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 NXPE1Q8N323 547 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 METTL27Q8N6F8 245 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 CSNK1A1LQ8N752 337 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 ST6GALNAC3Q8NDV1 305 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 OR4N2Q8NGD1 307 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 OR5AR1Q8NGP9 310 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 OR1B1Q8NGR6 318 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 OR4K13Q8NH42 304 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 MARCH1Q8TCQ1 289 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 SKA2Q8WVK7 121 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 GLYATL1Q969I3 302 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 TMEM230Q96A57 120 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 WDYHV1Q96HA8 205 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 CCDC140Q96MF4 163 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 PTPN18Q99952 460 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 RSPO3Q9BXY4 272 aaPredicted RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 GPR27Q9NS67 375 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 AHSPQ9NZD4 102 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 ZNF581Q9P0T4 197 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 PRSS50Q9UI38 385 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 MRPS28Q9Y2Q9 187 aaKnown RBP5.06□□□□□ -1.6
CD44-225ENST00000527326 NUP205Q92621 2012 aa5.06□□□□□ -1.6
CD44-225ENST00000527326 A0A1B0GV50 99 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 GAGE10A6NGK3 116 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 ZNF732B4DXR9 585 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 G3V3Y1 287 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 H0Y8X5 98 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 J3QR89 54 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 K7EQM0 130 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 M0R1X1 148 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 ARPC3O15145 178 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 RAMP2O60895 175 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 ZNF253O75346 499 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 PITX3O75364 302 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 SAP30O75446 220 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 ETHE1O95571 254 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 F3P13726 295 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 IL9P15248 144 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 CD22P20273 847 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 SERPINA4P29622 427 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 SLC6A6P31641 620 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 SFTPDP35247 375 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 PTGER4P35408 488 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 RBMXP38159 391 aaKnown RBP5.05□□□□□ -1.6
CD44-225ENST00000527326 CDKN1AP38936 164 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 WASP42768 502 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 SGSHP51688 502 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 MANFP55145 182 aaKnown RBP5.05□□□□□ -1.6
CD44-225ENST00000527326 PIGPP57054 158 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 FXYD6P3P58550 94 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 PFN3P60673 137 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 PMP22Q01453 160 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 Q0VG73 95 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 RAB30Q15771 203 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 ANKRD55Q3KP44 614 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 ZNF260Q3ZCT1 412 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 DCST2Q5T1A1 773 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 KIAA0895LQ68EN5 471 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 UFSP1Q6NVU6 142 aa5.05□□□□□ -1.6
CD44-225ENST00000527326 MRPL54Q6P161 138 aaKnown RBP5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms