RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 SNIP1Q8TAD8 396 aaKnown RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 MRGPRX4Q96LA9 322 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 DDA1Q9BW61 102 aa8.41□□□□□ -1.06
VCAN-210ENST00000513960 C19orf25Q9UFG5 118 aaPredicted RBP8.41□□□□□ -1.06
VCAN-210ENST00000513960 DFFBO76075 338 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 ZNF43P17038 809 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 SPCS3P61009 180 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 ZNF154Q13106 437 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 DUSP23Q9BVJ7 150 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 DEFB126Q9BYW3 111 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 DUSP15Q9H1R2 295 aaPredicted RBP8.4□□□□□ -1.06
VCAN-210ENST00000513960 PLEK2Q9NYT0 353 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 KLHL13Q9P2N7 655 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 IGLV3-12A0A075B6K2 115 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 NPIPB13A6NJU9 1138 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 NPIPB4C9JG80 1138 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 OR7C1O76099 320 aaPredicted RBP8.4□□□□□ -1.06
VCAN-210ENST00000513960 TIAF1O95411 115 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 MPZP25189 248 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 THBS4P35443 961 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 MYBPHQ13203 477 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 MFAP5Q13361 173 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 GUSBP11Q6P575 273 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 SLC35G3Q8N808 338 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 SLC25A31Q9H0C2 315 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 SIRT7Q9NRC8 400 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 SLC2A9Q9NRM0 540 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 WNT16Q9UBV4 365 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 ANXA10Q9UJ72 324 aa8.4□□□□□ -1.06
VCAN-210ENST00000513960 PHF3Q92576 2039 aaKnown RBP8.4□□□□□ -1.06
VCAN-210ENST00000513960 CNOT4O95628 575 aaKnown RBP8.4□□□□□ -1.07
VCAN-210ENST00000513960 IGHG1P01857 330 aa8.4□□□□□ -1.07
VCAN-210ENST00000513960 SRP19P09132 144 aaKnown RBP8.4□□□□□ -1.07
VCAN-210ENST00000513960 QRFPP83859 136 aa8.4□□□□□ -1.07
VCAN-210ENST00000513960 DOK3Q7L591 496 aa8.4□□□□□ -1.07
VCAN-210ENST00000513960 CCDC71LQ8N9Z2 235 aa8.4□□□□□ -1.07
VCAN-210ENST00000513960 MALSU1Q96EH3 234 aa8.4□□□□□ -1.07
VCAN-210ENST00000513960 HIST1H2BLQ99880 126 aa8.4□□□□□ -1.07
VCAN-210ENST00000513960 ZNF319Q9P2F9 582 aa8.4□□□□□ -1.07
VCAN-210ENST00000513960 EREGO14944 169 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 H3F3AP84243 136 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 TMEM267Q0VDI3 215 aaPredicted RBP8.39□□□□□ -1.07
VCAN-210ENST00000513960 HIKESHIQ53FT3 197 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 THEM4Q5T1C6 240 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 ZNF787Q6DD87 383 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 OR10G3Q8NGC4 313 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 OR2AE1Q8NHA4 323 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 PLK3Q9H4B4 646 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 MYOTQ9UBF9 498 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 CRYM-AS1A6NIL9 109 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 SERPINE3A8MV23 424 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 PPP5D1E7EU14 171 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 MASP2O00187 686 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 HSD17B6O14756 317 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 SRSF10O75494 262 aaKnown RBP8.39□□□□□ -1.07
VCAN-210ENST00000513960 PGA3P0DJD8 388 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 LYL1P12980 280 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 CLN3Q13286 438 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 M1APQ8TC57 530 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 RBM14Q96PK6 669 aaKnown RBP8.39□□□□□ -1.07
VCAN-210ENST00000513960 GINS3Q9BRX5 216 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 ZNF665Q9H7R5 613 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 FER1L5A0AVI2 2057 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 ADAM20O43506 726 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 SPINK2P20155 84 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 PMELP40967 661 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 CCL7P80098 99 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 LIAT1Q6ZQX7 453 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 BORCS8Q96FH0 119 aa8.39□□□□□ -1.07
VCAN-210ENST00000513960 FOXD3Q9UJU5 478 aaPredicted RBP8.39□□□□□ -1.07
VCAN-210ENST00000513960 C5orf63A6NC05 138 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 DBHP09172 617 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 RPS2P15880 293 aaKnown RBP8.38□□□□□ -1.07
VCAN-210ENST00000513960 CLDN17P56750 224 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 CXorf66Q5JRM2 361 aaPredicted RBP8.38□□□□□ -1.07
VCAN-210ENST00000513960 WDFY1Q8IWB7 410 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 ABHD5Q8WTS1 349 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 SMIM7Q9BQ49 75 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 METTL9Q9H1A3 318 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 ZNF581Q9P0T4 197 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 HBE1P02100 147 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 IAPPP10997 89 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 BMP5P22003 454 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 GLIPR1P48060 266 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 ARL6IP1Q15041 203 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 PLPPR5Q32ZL2 321 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 LYSMD4Q5XG99 296 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 LHFPL1Q86WI0 220 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 C1QL4Q86Z23 238 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 SPOCK3Q9BQ16 436 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 ZNF286AQ9HBT8 521 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 KIAA1456Q9P272 454 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 DKKL1Q9UK85 242 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 NUP210LQ5VU65 1888 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 RALGAPA1Q6GYQ0 2036 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 IGSF23A1L1A6 192 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 H7BYZ3 331 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 TLX3O43711 291 aaPredicted RBP8.38□□□□□ -1.07
VCAN-210ENST00000513960 LCATP04180 440 aa8.38□□□□□ -1.07
VCAN-210ENST00000513960 IL13RA2Q14627 380 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms