RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 OR5B21A6NL26 309 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 KRTAP9-6A8MVA2 160 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 OOSP1A8MZH6 123 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 ZNF878C9JN71 531 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 F5H5P2 479 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 M0R135 149 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 KPNA4O00629 521 aaPredicted RBP3.09□□□□□ -1.91
USP54-217ENST00000498213 MRASO14807 208 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 SIGLEC5O15389 551 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 GYG2O15488 501 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 NOS1APO75052 506 aaPredicted RBP3.09□□□□□ -1.91
USP54-217ENST00000498213 GMNNO75496 209 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 DEDDO75618 318 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 ATP5HO75947 161 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 CYB5R3P00387 301 aaPredicted RBP3.09□□□□□ -1.91
USP54-217ENST00000498213 CST4P01036 141 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 H1F0P07305 194 aaKnown RBP3.09□□□□□ -1.91
USP54-217ENST00000498213 RPSAP08865 295 aaKnown RBP3.09□□□□□ -1.91
USP54-217ENST00000498213 ZNF823P16415 610 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 MNAT1P51948 309 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 CRYBA2P53672 197 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 MTPNP58546 118 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 FMODQ06828 376 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 SELPLGQ14242 412 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 OR8B8Q15620 311 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 RFX4Q33E94 735 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 MESTQ5EB52 335 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 TMEM255AQ5JRV8 349 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 OR2T2Q6IF00 324 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 VMO1Q7Z5L0 202 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 NKAIN4Q8IVV8 208 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 C10orf67Q8IYJ2 551 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 DEFB107AQ8IZN7 70 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 C10orf111Q8N326 155 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 ZNF561Q8N587 486 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 GCSAMQ8N6F7 178 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 OR51D1Q8NGF3 324 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 OR9Q1Q8NGQ5 310 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 OR8S1Q8NH09 359 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 OR51A7Q8NH64 312 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 MOSPD2Q8NHP6 518 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 PFN4Q8NHR9 129 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 ZNF671Q8TAW3 534 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 RPS4Y2Q8TD47 263 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 ST8SIA4Q92187 359 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 TNFRSF14Q92956 283 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 LHX4Q969G2 390 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 RRNAD1Q96FB5 475 aaKnown RBP3.09□□□□□ -1.91
USP54-217ENST00000498213 SDSLQ96GA7 329 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 ZNF799Q96GE5 643 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 TMEM68Q96MH6 324 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 PITX2Q99697 317 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 CITED2Q99967 270 aaPredicted RBP3.09□□□□□ -1.91
USP54-217ENST00000498213 THTPAQ9BU02 230 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 RTL8AQ9BWD3 113 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 C1orf21Q9H246 121 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 MMADHCQ9H3L0 296 aaPredicted RBP3.09□□□□□ -1.91
USP54-217ENST00000498213 DCLRE1BQ9H816 532 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 RHOFQ9HBH0 211 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 IL1RAPQ9NPH3 570 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 PCDHB16Q9NRJ7 776 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 KRT84Q9NSB2 600 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 HAO2Q9NYQ3 351 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 USE1Q9NZ43 259 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 DNAJB9Q9UBS3 223 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 TMCC3Q9ULS5 477 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 B9D1Q9UPM9 204 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 POLDIP2Q9Y2S7 368 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 LHFPL6Q9Y693 200 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 ENPP4Q9Y6X5 453 aa3.09□□□□□ -1.91
USP54-217ENST00000498213 KMT2AQ03164 3969 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 TRAV27A0A087WT01 109 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 A6NLC8 198 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 SLC1A7O00341 560 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 NME4O00746 187 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 RER1O15258 196 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 MTRF1O75570 445 aaKnown RBP3.08□□□□□ -1.92
USP54-217ENST00000498213 ATP6V1G2O95670 118 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 ZNF682O95780 498 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 ATP6V1B2P21281 511 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 SAA4P35542 130 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 PMELP40967 661 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OMPP47874 163 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 INSL3P51460 131 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 SLC25A1P53007 311 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 PSME3P61289 254 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 GNG3P63215 75 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 MS4A2Q01362 244 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 MEF2CQ06413 473 aaPredicted RBP3.08□□□□□ -1.92
USP54-217ENST00000498213 SMIM21Q3B7S5 101 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 TMEM30BQ3MIR4 351 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 DNAL1Q4LDG9 190 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 STUMQ69YW2 141 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 OR52W1Q6IF63 320 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 C1orf94Q6P1W5 598 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 WDR82Q6UXN9 313 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 UNQ9370/PRO34162Q6UXP9 181 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 DPY19L4Q7Z388 723 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 RTN4RL2Q86UN3 420 aa3.08□□□□□ -1.92
USP54-217ENST00000498213 EGFL6Q8IUX8 553 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms