RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 LGALS7P47929 136 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 ZFP36L2P47974 494 aaKnown RBP11.59□□□□□ -0.55
PTPRF-215ENST00000496447 SLC25A30Q5SVS4 291 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 ZNF426Q9BUY5 554 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 ASCC3Q8N3C0 2202 aaKnown RBP11.59□□□□□ -0.55
PTPRF-215ENST00000496447 A0A1W2PPC1 479 aa11.58□□□□□ -0.55
PTPRF-215ENST00000496447 MRPS11P82912 194 aaKnown RBP11.58□□□□□ -0.55
PTPRF-215ENST00000496447 SFTPA2Q8IWL1 248 aa11.58□□□□□ -0.55
PTPRF-215ENST00000496447 POM121Q96HA1 1249 aa11.58□□□□□ -0.55
PTPRF-215ENST00000496447 ATXN7O15265 892 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-215ENST00000496447 PTHLHP12272 177 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 TUSC1Q2TAM9 212 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 ZNF528Q3MIS6 628 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 MIDNQ504T8 468 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 ASCL5Q7RTU5 278 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 ZNF501Q96CX3 271 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-215ENST00000496447 HEXA-AS1Q9H8Q6 139 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 BET1LQ9NYM9 111 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 MMP24Q9Y5R2 645 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 KCNMB2Q9Y691 235 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 A0A1W2PPQ1 181 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 ANKRD34CP0C6C1 535 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 PGA3P0DJD8 388 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 NTF3P20783 257 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 PEBP1P30086 187 aaKnown RBP11.58□□□□□ -0.56
PTPRF-215ENST00000496447 KRTDAPP60985 99 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 INO80CQ6PI98 192 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-215ENST00000496447 ZNF66Q6ZN08 573 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 ZNF788Q6ZQV5 615 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 TCTEX1D1Q8N7M0 179 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 ADTRPQ96IZ2 230 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 PACRGQ96M98 296 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-215ENST00000496447 CDIPTO14735 213 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 HAND1O96004 215 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 OPN1MWP04001 364 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 OPN1MW2P0DN77 364 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 OPN1MW3P0DN78 364 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 COX6B1P14854 86 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 FBXW9Q5XUX1 488 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 CHAC2Q8WUX2 184 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 FAM210BQ96KR6 192 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 RASL11BQ9BPW5 248 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 PLAC1Q9HBJ0 212 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 COA4Q9NYJ1 87 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 SIPA1L3O60292 1781 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-215ENST00000496447 FOXS1O43638 330 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 CTAG2O75638 210 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 SP9P0CG40 484 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 RHOBP62745 196 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 INSL4Q14641 139 aa11.58□□□□□ -0.56
PTPRF-215ENST00000496447 CD96P40200 585 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 ID4P47928 161 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 DGAT2L6Q6ZPD8 337 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 STRCP1A6NGW2 1772 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 STARD6P59095 220 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 SLC38A11Q08AI6 406 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 SPINK9Q5DT21 86 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 OR4S2Q8NH73 311 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 ZNF665Q9H7R5 613 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 ZDHHC11Q9H8X9 412 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 UBR3Q6ZT12 1888 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 OR2J3O76001 311 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 PRSS23O95084 383 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 FAM3AP98173 230 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 SLC22A18ASQ8N1D0 253 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 RAB40CQ96S21 281 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 RASL12Q9NYN1 266 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 C1RLQ9NZP8 487 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 MRM2Q9UI43 246 aaKnown RBP11.57□□□□□ -0.56
PTPRF-215ENST00000496447 MRPS18BQ9Y676 258 aaKnown RBP11.57□□□□□ -0.56
PTPRF-215ENST00000496447 HOXB1P14653 301 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-215ENST00000496447 B2MP61769 119 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 FNDC7Q5VTL7 733 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 WDR31Q8NA23 367 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 OR52L2PQ8NGH6 319 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 VSTM2AQ8TAG5 236 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 SLC25A40Q8TBP6 338 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 ZNF721Q8TF20 911 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 MS4A10Q96PG2 267 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 CLEC5AQ9NY25 188 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 CACNG5Q9UF02 275 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 OOEPA6NGQ2 149 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 EPOPA6NHQ4 379 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 ZNF260Q3ZCT1 412 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 FFAR4Q5NUL3 377 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 C17orf47Q8NEP4 570 aa11.57□□□□□ -0.56
PTPRF-215ENST00000496447 PCDHGA9Q9Y5G4 932 aaKnown RBP11.57□□□□□ -0.56
PTPRF-215ENST00000496447 NKX2-8O15522 239 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 IGHA2P01877 340 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 KRTCAP3Q53RY4 240 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 SPNS3Q6ZMD2 512 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 DDA1Q9BW61 102 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 TMEM38BQ9NVV0 291 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 MCM3APO60318 1980 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 BCL3P20749 454 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 MESP2Q0VG99 397 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 PECRQ9BY49 303 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 LPAR2Q9HBW0 351 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 ARL2-SNX15V9GYD0 113 aa11.56□□□□□ -0.56
PTPRF-215ENST00000496447 ZNF320A2RRD8 509 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms