RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 SCN1BQ07699 218 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 BNIP1Q12981 228 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 TPTE2P1Q5T6R2 138 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 OR51A4Q8NGJ6 313 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 OR5D18Q8NGL1 313 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 OR13C9Q8NGT0 318 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 COQ2Q96H96 371 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 OSBPL10Q9BXB5 764 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 RHOFQ9HBH0 211 aa17.6■□□□□ 0.41
HDDC3-203ENST00000494993 DAPL1A0PJW8 107 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 SH2D7A6NKC9 451 aaPredicted RBP17.59■□□□□ 0.41
HDDC3-203ENST00000494993 J3QRE1 110 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 TOR1AO14656 332 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 SLC16A6O15403 523 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 AMY1AP04745 511 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 AMY2AP04746 511 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 CCR9P51686 369 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 KRBOX4Q5JUW0 171 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 C1orf146Q5VVC0 180 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 Q6P435 159 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 C10orf99Q6UWK7 81 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 SAXO1Q8IYX7 474 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 CHST4Q8NCG5 386 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 OR4D6Q8NGJ1 314 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 OR13C3Q8NGS6 347 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 TRUB1Q8WWH5 349 aaKnown RBP17.59■□□□□ 0.41
HDDC3-203ENST00000494993 CENPNQ96H22 339 aaPredicted RBP17.59■□□□□ 0.41
HDDC3-203ENST00000494993 NEK6Q9HC98 313 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 IMPAD1Q9NX62 359 aa17.59■□□□□ 0.41
HDDC3-203ENST00000494993 A0A087X0M5 115 aa17.58■□□□□ 0.4
HDDC3-203ENST00000494993 A0A1B0GX30 115 aa17.58■□□□□ 0.4
HDDC3-203ENST00000494993 ZNF729A6NN14 1252 aaPredicted RBP17.58■□□□□ 0.4
HDDC3-203ENST00000494993 LY6LH3BQJ8 138 aa17.58■□□□□ 0.4
HDDC3-203ENST00000494993 K7EIL1 84 aa17.58■□□□□ 0.4
HDDC3-203ENST00000494993 SLC33A1O00400 549 aaPredicted RBP17.58■□□□□ 0.4
HDDC3-203ENST00000494993 PRRX1P54821 245 aa17.58■□□□□ 0.4
HDDC3-203ENST00000494993 ATXN7L3Q14CW9 347 aaPredicted RBP17.58■□□□□ 0.4
HDDC3-203ENST00000494993 RNFT2Q96EX2 444 aa17.58■□□□□ 0.4
HDDC3-203ENST00000494993 RCC1LQ96I51 464 aaKnown RBP17.58■□□□□ 0.4
HDDC3-203ENST00000494993 ING3Q9NXR8 418 aa17.58■□□□□ 0.4
HDDC3-203ENST00000494993 COL7A1Q02388 2944 aa17.58■□□□□ 0.4
HDDC3-203ENST00000494993 SAC3D1A6NKF1 404 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 OOSP1A8MZH6 123 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 MNDAP41218 407 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 OR3A4PP47883 348 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 C17orf58Q2M2W7 97 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 KHDC1LQ5JSQ8 128 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 UTF1Q5T230 341 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 CCDC144NLQ6NUI1 221 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 PELI1Q96FA3 418 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 ZCCHC4Q9H5U6 513 aa17.57■□□□□ 0.4
HDDC3-203ENST00000494993 OR4C45A6NMZ5 311 aa17.56■□□□□ 0.4
HDDC3-203ENST00000494993 M0QZK8 103 aa17.56■□□□□ 0.4
HDDC3-203ENST00000494993 DUS4LO95620 317 aaKnown RBP17.56■□□□□ 0.4
HDDC3-203ENST00000494993 RASSF2P50749 326 aa17.56■□□□□ 0.4
HDDC3-203ENST00000494993 RBM39Q14498 530 aaKnown RBP17.56■□□□□ 0.4
HDDC3-203ENST00000494993 C9orf152Q5JTZ5 239 aa17.56■□□□□ 0.4
HDDC3-203ENST00000494993 SLC25A30Q5SVS4 291 aa17.56■□□□□ 0.4
HDDC3-203ENST00000494993 PPIL3Q9H2H8 161 aaKnown RBP17.56■□□□□ 0.4
HDDC3-203ENST00000494993 INPP5EQ9NRR6 644 aa17.56■□□□□ 0.4
HDDC3-203ENST00000494993 OR6C3Q9NZP0 311 aa17.56■□□□□ 0.4
HDDC3-203ENST00000494993 MYRFQ9Y2G1 1151 aa17.56■□□□□ 0.4
HDDC3-203ENST00000494993 J3QLW9 94 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 DEGS1O15121 323 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 CLIC3O95833 236 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 ZNF19P17023 458 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 NFYBP25208 207 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 ALKBH1Q13686 389 aaKnown RBP17.55■□□□□ 0.4
HDDC3-203ENST00000494993 CDK5R1Q15078 307 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 OSR2Q8N2R0 312 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 ACBD7Q8N6N7 88 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 OR9G1Q8NH87 305 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 KIRREL1Q96J84 757 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 HRASLS5Q96KN8 279 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 C4orf36Q96KX1 117 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 MOB4Q9Y3A3 225 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 HSPE1-MOB4S4R3N1 261 aa17.55■□□□□ 0.4
HDDC3-203ENST00000494993 KBTBD11-OT1A0A1B0GTJ5 212 aa17.54■□□□□ 0.4
HDDC3-203ENST00000494993 HCKP08631 526 aa17.54■□□□□ 0.4
HDDC3-203ENST00000494993 CGB3P0DN86 165 aa17.54■□□□□ 0.4
HDDC3-203ENST00000494993 CGB7P0DN87 165 aa17.54■□□□□ 0.4
HDDC3-203ENST00000494993 TMEM225BP0DP42 221 aa17.54■□□□□ 0.4
HDDC3-203ENST00000494993 ZP1P60852 638 aa17.54■□□□□ 0.4
HDDC3-203ENST00000494993 SNRPGP62308 76 aaKnown RBP17.54■□□□□ 0.4
HDDC3-203ENST00000494993 MEDAGQ5VYS4 303 aa17.54■□□□□ 0.4
HDDC3-203ENST00000494993 TOMM40LQ969M1 308 aa17.54■□□□□ 0.4
HDDC3-203ENST00000494993 EXOGQ9Y2C4 368 aaKnown RBP17.54■□□□□ 0.4
HDDC3-203ENST00000494993 PSMB11A5LHX3 300 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A18PA6NE21 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A16PA6NEW6 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A20PA6NIJ5 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A9PA6NNJ1 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A12PA8MX19 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A5PA8MXJ8 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A15PP0C7V4 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A13PP0C7W8 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A14PP0C7W9 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM90A24PP0C7X0 464 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 FAM106CPP0CH98 169 aa17.53■□□□□ 0.4
HDDC3-203ENST00000494993 DBTP11182 482 aaKnown RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms