RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 C12orf4Q9NQ89 552 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 KCNK7Q9Y2U2 307 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 CACNG2Q9Y698 323 aa14.4□□□□□ -0.1
CCDC28B-202ENST00000421922 RAI1Q7Z5J4 1906 aaPredicted RBP14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 DSCAMO60469 2012 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 ANKRD20A5PA0PJZ0 165 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 TMEM178BH3BS89 294 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 SLC33A1O00400 549 aaPredicted RBP14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 LYRM1O43325 122 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 LHBP01229 141 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 MUC1P15941 1255 aaPredicted RBP14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 CEBPDP49716 269 aaPredicted RBP14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 TRIM16LQ309B1 348 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 DNM1P46Q6ZS02 220 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 PEG10Q86TG7 708 aaKnown RBP14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 DEFB108BQ8NET1 73 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 OR5T2Q8NGG2 359 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 ENKURQ8TC29 256 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 CHST6Q9GZX3 395 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 DLL4Q9NR61 685 aa14.39□□□□□ -0.11
CCDC28B-202ENST00000421922 UTP20O75691 2785 aaKnown RBP14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PPIAL4EA0A075B759 164 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 TRAV24A0A0B4J272 114 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 FAM221AA4D161 298 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 ZNF736B4DX44 427 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PPIAL4DF5H284 164 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 H7C1Q1 480 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 LGALS8O00214 317 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 SSX5O60225 188 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PTTG1O95997 202 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 AKAIN1P0CW23 69 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PPIAL4FP0DN26 164 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PSG2P11465 335 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 AMY2BP19961 511 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 DTYMKP23919 212 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PRDX2P32119 198 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 HOXA4Q00056 320 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 COL10A1Q03692 680 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 DYRK1AQ13627 763 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 KCNJ8Q15842 424 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 BPIFB2Q8N4F0 458 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 TMEM229BQ8NBD8 167 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 DEDD2Q8WXF8 326 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 DYRK2Q92630 601 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PSMG3-AS1Q96PY0 264 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 ST6GALNAC5Q9BVH7 336 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PPA2Q9H2U2 334 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 RIMS4Q9H426 269 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 ZNF107Q9UII5 783 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 TBC1D24Q9ULP9 559 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 PPIAL4AQ9Y536 164 aa14.38□□□□□ -0.11
CCDC28B-202ENST00000421922 NAP1L6A6NFF2 107 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 ZNF205O95201 554 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 CDKN1AP38936 164 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 KCNJ3P48549 501 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 KLF9Q13886 244 aaPredicted RBP14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 ACTBL2Q562R1 376 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 FAM201AQ5SY85 155 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 MINDY2Q8NBR6 621 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 CCL19Q99731 98 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 OCSTAMPQ9BR26 566 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 MYOZ1Q9NP98 299 aaPredicted RBP14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 MCUBQ9NWR8 336 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 EDARQ9UNE0 448 aa14.37□□□□□ -0.11
CCDC28B-202ENST00000421922 FCGR3AP08637 254 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 HLA-DMAP28067 261 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 ARPC4P59998 168 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 ATXN7L3Q14CW9 347 aaPredicted RBP14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 RNASE10Q5GAN6 216 aaKnown RBP14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 TEX36Q5VZQ5 186 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 STEAP1BQ6NZ63 245 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 TGIF2LYQ8IUE0 185 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 GVQW1Q8N7I0 195 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 BEST4Q8NFU0 473 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 TIMD4Q96H15 378 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 HDHD3Q9BSH5 251 aaPredicted RBP14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 C11orf54Q9H0W9 315 aaPredicted RBP14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 ZNF665Q9H7R5 613 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 SEBOXQ9HB31 216 aaPredicted RBP14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 ZNF286AQ9HBT8 521 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 ING3Q9NXR8 418 aa14.36□□□□□ -0.11
CCDC28B-202ENST00000421922 FAM240BA0A1B0GVZ2 78 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 RAB3DO95716 219 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 GYPAP02724 150 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 MT-ND4P03905 459 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 DAOP14920 347 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 TBPP20226 339 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 LMO1P25800 156 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 OR3A3P47888 321 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 TAS2R46P59540 309 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 MRPS11P82912 194 aaKnown RBP14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 MEF2DQ14814 521 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 GRK1Q15835 563 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 CHRFAM7AQ494W8 412 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 SHEQ5VZ18 495 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 HOGA1Q86XE5 327 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 ZNF561Q8N587 486 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 OR5H2Q8NGV7 314 aa14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 DCAF16Q9NXF7 216 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms