RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 IFI44Q8TCB0 444 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 EDARADDQ8WWZ3 215 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 NAT6Q93015 286 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 S100A13Q99584 98 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 SLC7A10Q9NS82 523 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 C19orf25Q9UFG5 118 aaPredicted RBP8.47□□□□□ -1.05
SS18-203ENST00000415083 FBXO7Q9Y3I1 522 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 ARHGAP21Q5T5U3 1957 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 NSG1A0A0A6YYJ2 146 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 CDRT15L2A8MXV6 281 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 PHF1O43189 567 aaPredicted RBP8.47□□□□□ -1.05
SS18-203ENST00000415083 CXCL13O43927 109 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 LILRA1O75019 489 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 PPYP01298 95 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 CCL2P13500 99 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 SSR4P51571 173 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 CEBPGP53567 150 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 UCP3P55916 312 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 RAC3P60763 192 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 CEACAM16Q2WEN9 425 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 TMEM182Q6ZP80 229 aaPredicted RBP8.47□□□□□ -1.05
SS18-203ENST00000415083 COLCA1Q6ZS62 124 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 SUMF1Q8NBK3 374 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 M1APQ8TC57 530 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 MR1Q95460 341 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 SPSB4Q96A44 273 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 DKKL1Q9UK85 242 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 PILRBQ9UKJ0 227 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 KIAA1324LA8MWY0 1029 aaPredicted RBP8.47□□□□□ -1.05
SS18-203ENST00000415083 NTN3O00634 580 aaPredicted RBP8.47□□□□□ -1.05
SS18-203ENST00000415083 F10P00742 488 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 OR13C7P0DN81 318 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 BCL3P20749 454 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 HTR5AP47898 357 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 LHFPL2Q6ZUX7 228 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 SELENOHQ8IZQ5 122 aaKnown RBP8.47□□□□□ -1.05
SS18-203ENST00000415083 SUCNR1Q9BXA5 334 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 GPR35Q9HC97 309 aa8.47□□□□□ -1.05
SS18-203ENST00000415083 CHD3Q12873 2000 aaKnown RBP8.46□□□□□ -1.05
SS18-203ENST00000415083 MPPED1O15442 326 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 PDCD6O75340 191 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 TSPAN15O95858 294 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 MAS1LP35410 378 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 RPS23P62266 143 aaKnown RBP8.46□□□□□ -1.05
SS18-203ENST00000415083 ZFP36L1Q07352 338 aaKnown RBP8.46□□□□□ -1.05
SS18-203ENST00000415083 WIPI1Q5MNZ9 446 aaPredicted RBP8.46□□□□□ -1.05
SS18-203ENST00000415083 MEX3BQ6ZN04 569 aaKnown RBP8.46□□□□□ -1.05
SS18-203ENST00000415083 CPT1CQ8TCG5 803 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 TCEAL3Q969E4 200 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 BORCS8Q96FH0 119 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 MAGT1Q9H0U3 335 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 RGCCQ9H4X1 137 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 KPTNQ9Y664 436 aa8.46□□□□□ -1.05
SS18-203ENST00000415083 C3orf85A0A1B0GTC6 90 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 TRDCB7Z8K6 153 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 NDUFS6O75380 124 aaKnown RBP8.46□□□□□ -1.06
SS18-203ENST00000415083 CBR3O75828 277 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 NXPH3O95157 252 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 NAPSAO96009 420 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 IFNA21P01568 189 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 SULT1A1P50225 295 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 S100A12P80511 92 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 TSC22D1Q15714 1073 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 NMSQ5H8A3 153 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 ACER2Q5QJU3 275 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 RTL6Q6ICC9 239 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 FBXW12Q6X9E4 464 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 TBC1D26Q86UD7 250 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 MYPOPQ86VE0 399 aaPredicted RBP8.46□□□□□ -1.06
SS18-203ENST00000415083 RPS19BP1Q86WX3 136 aaKnown RBP8.46□□□□□ -1.06
SS18-203ENST00000415083 LINC00469Q8N7U9 141 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 ZNF611Q8N823 705 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 OR10D3Q8NH80 312 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 PIGCQ92535 297 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 INTS12Q96CB8 462 aaKnown RBP8.46□□□□□ -1.06
SS18-203ENST00000415083 FOXB1Q99853 325 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 SF3B5Q9BWJ5 86 aaKnown RBP8.46□□□□□ -1.06
SS18-203ENST00000415083 C1QTNF5Q9BXJ0 243 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 TMEM222Q9H0R3 208 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 FAM212BQ9NTI7 297 aaPredicted RBP8.46□□□□□ -1.06
SS18-203ENST00000415083 TAAR3PQ9P1P4 343 aa8.46□□□□□ -1.06
SS18-203ENST00000415083 SLC33A1O00400 549 aaPredicted RBP8.45□□□□□ -1.06
SS18-203ENST00000415083 IGLV2-14P01704 120 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 ATP6V0CP27449 155 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 DUSP1P28562 367 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 CXCL12P48061 93 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 GFRA1P56159 465 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 FOXO1Q12778 655 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 IL13RA2Q14627 380 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 RNF212Q495C1 297 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 GPR157Q5UAW9 335 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 CDPF1Q6NVV7 123 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 SLC25A26Q70HW3 274 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 PPP1R32Q7Z5V6 425 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 MED12LQ86YW9 2145 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 TMEM56Q96MV1 263 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 TUBA4BQ9H853 241 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 BCO1Q9HAY6 547 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 MTCH1Q9NZJ7 389 aa8.45□□□□□ -1.06
SS18-203ENST00000415083 RNF115Q9Y4L5 304 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms