RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TRA2AQ13595 282 aaKnown RBP eCLIP11.54□□□□□ -0.56
VPS54-203ENST00000409558 FAM53AQ6NSI3 398 aaPredicted RBP11.54□□□□□ -0.56
VPS54-203ENST00000409558 TMEM182Q6ZP80 229 aaPredicted RBP11.54□□□□□ -0.56
VPS54-203ENST00000409558 SLC35G3Q8N808 338 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 LHFPL5Q8TAF8 219 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 KCNE4Q8WWG9 221 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 SPSB1Q96BD6 273 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 PRRX2Q99811 253 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CDRT15L2A8MXV6 281 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 HKR1P10072 659 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 RPS2P15880 293 aaKnown RBP11.53□□□□□ -0.56
VPS54-203ENST00000409558 FKBP2P26885 142 aaKnown RBP11.53□□□□□ -0.56
VPS54-203ENST00000409558 FAM76BQ5HYJ3 339 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 SLC25A24Q6NUK1 477 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 LHFPL2Q6ZUX7 228 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 POC1AQ8NBT0 407 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 PRO3102Q9H379 93 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 CCL28Q9NRJ3 127 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 USF3Q68DE3 2245 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 MED13LQ71F56 2210 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 hCG_38984A0A1B0GV85 526 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 TMEM218A2RU14 115 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 NKX2-6A6NCS4 301 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 DBX1A6NMT0 343 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 SNRNP70P08621 437 aaKnown RBP11.53□□□□□ -0.56
VPS54-203ENST00000409558 PLA2G5P39877 138 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 ZNF133P52736 654 aaPredicted RBP11.53□□□□□ -0.56
VPS54-203ENST00000409558 OR4A4PQ8NGN8 299 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 FAM213BQ8TBF2 198 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 ISOC2Q96AB3 205 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 CNTNAP3Q9BZ76 1288 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 FAM117AQ9C073 453 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 WRBO00258 174 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 GPR37O15354 613 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 AGFG2O95081 481 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 PVALBP20472 110 aaPredicted RBP11.53□□□□□ -0.56
VPS54-203ENST00000409558 OTX1P32242 354 aaPredicted RBP11.53□□□□□ -0.56
VPS54-203ENST00000409558 FUT6P51993 359 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 PCBD1P61457 104 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 AKAP6Q13023 2319 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 FAM189A2Q15884 450 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 LHFPL1Q86WI0 220 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 GAPTQ8N292 157 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 TPRX1Q8N7U7 411 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 ABI3Q9P2A4 366 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 PPP1R3CQ9UQK1 317 aa11.53□□□□□ -0.56
VPS54-203ENST00000409558 A6NLC8 198 aa11.52□□□□□ -0.56
VPS54-203ENST00000409558 PDCD6O75340 191 aa11.52□□□□□ -0.56
VPS54-203ENST00000409558 MT-CO3P00414 261 aa11.52□□□□□ -0.56
VPS54-203ENST00000409558 OR13C7P0DN81 318 aa11.52□□□□□ -0.56
VPS54-203ENST00000409558 CBR1P16152 277 aa11.52□□□□□ -0.56
VPS54-203ENST00000409558 FUT3P21217 361 aa11.52□□□□□ -0.56
VPS54-203ENST00000409558 CAMLGP49069 296 aa11.52□□□□□ -0.56
VPS54-203ENST00000409558 CXorf66Q5JRM2 361 aaPredicted RBP11.52□□□□□ -0.56
VPS54-203ENST00000409558 BARX1Q9HBU1 254 aaPredicted RBP11.52□□□□□ -0.56
VPS54-203ENST00000409558 NKX2-8O15522 239 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 CD37P11049 281 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 ZNF345Q14585 488 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 FAHD2BQ6P2I3 314 aaPredicted RBP11.52□□□□□ -0.57
VPS54-203ENST00000409558 Q6ZPA2 131 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 MKXQ8IYA7 352 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 FAHD2AQ96GK7 314 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 FAM173AQ9BQD7 235 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 ZNF107Q9UII5 783 aaPredicted RBP11.52□□□□□ -0.57
VPS54-203ENST00000409558 SPAARA0A1B0GVQ0 90 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 YKT6O15498 198 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 PET100P0DJ07 73 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 ZFP62Q8NB50 900 aaPredicted RBP11.52□□□□□ -0.57
VPS54-203ENST00000409558 SF3B5Q9BWJ5 86 aaKnown RBP11.52□□□□□ -0.57
VPS54-203ENST00000409558 PIGMQ9H3S5 423 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 MTCH1Q9NZJ7 389 aa11.52□□□□□ -0.57
VPS54-203ENST00000409558 IGKV1D-13A0A0B4J2D9 117 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 TSPAN15O95858 294 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 PPYP01298 95 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 IGKV1-13P0DP09 117 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 RBM11P57052 281 aaKnown RBP11.51□□□□□ -0.57
VPS54-203ENST00000409558 CLN3Q13286 438 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 LDLRAD3Q86YD5 345 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 ABHD14AQ9BUJ0 271 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 SUCNR1Q9BXA5 334 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 ZNF703Q9H7S9 590 aaPredicted RBP11.51□□□□□ -0.57
VPS54-203ENST00000409558 NAA60Q9H7X0 242 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 SH2D2AQ9NP31 389 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 GHRLQ9UBU3 117 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 C9JQL5 133 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 WDR1O75083 606 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 APLNRP35414 380 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 ADAMTS20P59510 1910 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 ADAM20O43506 726 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 TK1P04183 234 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 RUNX1Q01196 453 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 MIDNQ504T8 468 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 RNFT1Q5M7Z0 435 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 SSC4DQ8WTU2 575 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 GLYATL2Q8WU03 294 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 INTS12Q96CB8 462 aaKnown RBP11.51□□□□□ -0.57
VPS54-203ENST00000409558 FGF23Q9GZV9 251 aaPredicted RBP11.51□□□□□ -0.57
VPS54-203ENST00000409558 RPS10P5Q9NQ39 176 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 LHX2P50458 406 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 TBC1D26Q86UD7 250 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms