RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 NAPSAO96009 420 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 TFF1P04155 84 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 RLN1P04808 185 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 TRAPPC2P0DI81 140 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 TRAPPC2BP0DI82 140 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 VSIG10L2P0DP72 767 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 SERPINF1P36955 418 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 GATA4P43694 442 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 OR3A3P47888 321 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 ARPC4P59998 168 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 CDK10Q15131 360 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 ZNF808Q8N4W9 903 aaPredicted RBP11.84□□□□□ -0.51
GPNMB-203ENST00000409458 ARRDC1Q8N5I2 433 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 OR10Z1Q8NGY1 313 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 SLC25A21Q9BQT8 299 aaPredicted RBP11.84□□□□□ -0.51
GPNMB-203ENST00000409458 SEC22CQ9BRL7 303 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 IL19Q9UHD0 177 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 VSIG4Q9Y279 399 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 CACNA1BQ00975 2339 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 SRRM5B3KS81 715 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 SH2D1BO14796 132 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 PRAF2O60831 178 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 GLAP06280 429 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 AGAP20933 346 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 TNFSF4P23510 183 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 CBX3Q13185 183 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 SMIM21Q3B7S5 101 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 PAN3Q58A45 887 aaKnown RBP11.84□□□□□ -0.51
GPNMB-203ENST00000409458 ATPAF1Q5TC12 328 aaPredicted RBP11.84□□□□□ -0.51
GPNMB-203ENST00000409458 OVCH2Q7RTZ1 564 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 GCSAMQ8N6F7 178 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 LILRB1Q8NHL6 650 aaPredicted RBP11.84□□□□□ -0.51
GPNMB-203ENST00000409458 MRPL30Q8TCC3 161 aaKnown RBP11.84□□□□□ -0.51
GPNMB-203ENST00000409458 DACT3Q96B18 629 aaPredicted RBP11.84□□□□□ -0.51
GPNMB-203ENST00000409458 PPP1R14BQ96C90 147 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 PIK3IP1Q96FE7 263 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 PPA2Q9H2U2 334 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 OR51J1Q9H342 316 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 ZNF286AQ9HBT8 521 aa11.84□□□□□ -0.51
GPNMB-203ENST00000409458 TMEM82A0PJX8 343 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 C17orf100A8MU93 164 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 A8MV72 311 aaPredicted RBP11.83□□□□□ -0.52
GPNMB-203ENST00000409458 M0R233 179 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 KNG1P01042 644 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 HPXP02790 462 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 HNRNPCP07910 306 aaKnown RBP eCLIP11.83□□□□□ -0.52
GPNMB-203ENST00000409458 ADH4P08319 380 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 CFHR2P36980 270 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 RRAS2P62070 204 aaPredicted RBP11.83□□□□□ -0.52
GPNMB-203ENST00000409458 TSPAN5P62079 268 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 RBM39Q14498 530 aaKnown RBP11.83□□□□□ -0.52
GPNMB-203ENST00000409458 GLDNQ6ZMI3 551 aaPredicted RBP11.83□□□□□ -0.52
GPNMB-203ENST00000409458 C17orf107Q6ZR85 190 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 SLC36A1Q7Z2H8 476 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 LHFPL1Q86WI0 220 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 ZCCHC24Q8N2G6 241 aaKnown RBP11.83□□□□□ -0.52
GPNMB-203ENST00000409458 PLPPR1Q8TBJ4 325 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 Q9N2K0 584 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 GCM1Q9NP62 436 aa11.83□□□□□ -0.52
GPNMB-203ENST00000409458 RFPL4AA6NLU0 287 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 VSTM5A8MXK1 200 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 RFPL4AL1F8VTS6 287 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 CCNKO75909 580 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 CD55P08174 381 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 APOBEC3AP31941 199 aaPredicted RBP11.82□□□□□ -0.52
GPNMB-203ENST00000409458 ATXN7L3Q14CW9 347 aaPredicted RBP11.82□□□□□ -0.52
GPNMB-203ENST00000409458 C20orf204Q6ZNR8 217 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 C5orf24Q7Z6I8 188 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 TMED4Q7Z7H5 227 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 BOLLQ8N9W6 283 aaKnown RBP11.82□□□□□ -0.52
GPNMB-203ENST00000409458 OR52B4Q8NGK2 314 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 DIRC2Q96SL1 478 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 TMEM204Q9BSN7 226 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 RASL12Q9NYN1 266 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 METRNQ9UJH8 293 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF221Q9UK13 617 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 CACNA1DQ01668 2161 aa11.82□□□□□ -0.52
GPNMB-203ENST00000409458 IGHV3OR15-7A0A075B7D8 119 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 TRBV6-6A0A0A6YYG2 114 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 PSPNO60542 156 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 LHBP01229 141 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 IL5P05113 134 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 GSTT2P0CG29 244 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 LMO1P25800 156 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 MDH2P40926 338 aaKnown RBP11.81□□□□□ -0.52
GPNMB-203ENST00000409458 NPY4RP50391 375 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 CCL8P80075 99 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 FCN2Q15485 313 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 EFNB3Q15768 340 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 MST1LQ2TV78 715 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF672Q499Z4 452 aaPredicted RBP11.81□□□□□ -0.52
GPNMB-203ENST00000409458 AADACL3Q5VUY0 350 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 METTL11BQ5VVY1 283 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 SHEQ5VZ18 495 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 Q6ZS49 121 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 TGIF2LYQ8IUE0 185 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 CD177Q8N6Q3 437 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ZDHHC22Q8N966 263 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 OR5T2Q8NGG2 359 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 OR6F1Q8NGZ6 308 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms