RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 HIST3H3Q16695 136 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 ATP6V1FQ16864 119 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 IQCJQ1A5X6 159 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 FBXW9Q5XUX1 488 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 TOMM20LQ6UXN7 152 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 TMEM229BQ8NBD8 167 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 OR10G4Q8NGN3 311 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 OR10G9Q8NGN4 311 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 OR10G7Q8NGN6 311 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 OR4X1Q8NH49 305 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 TMPRSS13Q9BYE2 586 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 SLC25A37Q9NYZ2 338 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 PIPOXQ9P0Z9 390 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 MMP24Q9Y5R2 645 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 AFDNP55196 1824 aaKnown RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 J3QT63 122 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 KCNAB3O43448 404 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 TMEM127O75204 238 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 P01737 135 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 PRR35P0CG20 571 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 RIGQ13278 110 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 FAM27D1Q5T7N8 215 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 CGB2Q6NT52 195 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 WDR74Q6RFH5 385 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 CENPVQ7Z7K6 275 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 OR6X1Q8NH79 312 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 ANGPTL6Q8NI99 470 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 DPH3P1Q9H4G8 78 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 ISG20L2Q9H9L3 353 aaKnown RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 PARP4Q9UKK3 1724 aaKnown RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 ALPK2Q86TB3 2170 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 PCM1Q15154 2024 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 TMSB15BA0A087X1C1 80 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 IGSF23A1L1A6 192 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 CELA2BP08218 269 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 REG1BP48304 166 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 EVX1P49640 407 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 HLXQ14774 488 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 TMEM241Q24JQ0 296 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 FAM106AQ4KMX7 169 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 OR1N2Q8NGR9 330 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 GMPPAQ96IJ6 420 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 METTL26Q96S19 204 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 GPX7Q96SL4 187 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 TMEM30AQ9NV96 361 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 BAZ2AQ9UIF9 1905 aaKnown RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 IGKV3D-11A0A0A0MRZ8 115 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 A0A1B0GUH1 482 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 DLL1O00548 723 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 CHST1O43916 411 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 MPDU1O75352 247 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 PTBP3O95758 552 aaKnown RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 IGKV3-11P04433 115 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 CD226Q15762 336 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 ETFDHQ16134 617 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 ZNF429Q86V71 674 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 STPG3Q8N7X2 389 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 STXBP6Q8NFX7 210 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 ABHD3Q8WU67 409 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 RNF167Q9H6Y7 350 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 SIGLEC7Q9Y286 467 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 HELTA6NFD8 242 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 KLF7O75840 302 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 IGLV3-25P01717 112 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 TIAL1Q01085 375 aaKnown RBP eCLIP6.35□□□□□ -1.39
UPF2-203ENST00000397053 HIKESHIQ53FT3 197 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 CBLN3Q6UW01 205 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 MYEOVQ96EZ4 313 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 FAM210BQ96KR6 192 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 C19orf43Q9BQ61 176 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 DUSP15Q9H1R2 295 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 NAA60Q9H7X0 242 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 FAM60AQ9NP50 221 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 COL16A1Q07092 1604 aaPredicted RBP6.34□□□□□ -1.39
UPF2-203ENST00000397053 TTC3P53804 2025 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 SYNGR2O43760 224 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 ARG1P05089 322 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 ADRB1P08588 477 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 ASAH1Q13510 395 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 PSG5Q15238 335 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 LSMEM1Q8N8F7 131 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 OR10J6PQ8NGY7 276 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 DTD1Q8TEA8 209 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 SMIM4Q8WVI0 70 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 FFAR1O14842 300 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 C1QBP02746 253 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 HOXC4P09017 264 aaPredicted RBP6.34□□□□□ -1.39
UPF2-203ENST00000397053 INHBBP09529 407 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 CCL3P10147 92 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 PPOXP50336 477 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 GFRA1P56159 465 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 LGALSLQ3ZCW2 172 aaPredicted RBP6.34□□□□□ -1.39
UPF2-203ENST00000397053 TMEM78Q5T7P6 136 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 OR2C3Q8N628 320 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 TCTEX1D1Q8N7M0 179 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 ADAMTS17Q8TE56 1095 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 SSMEM1Q8WWF3 244 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 EID2BQ96D98 161 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 LOXL4Q96JB6 756 aa6.34□□□□□ -1.39
UPF2-203ENST00000397053 C16orf92Q96LL3 132 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms