RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 IGKV1-12A0A0C4DH73 117 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 OR5H14A6NHG9 310 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 OR2AT4A6NND4 320 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 LILRA1O75019 489 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 CFDP00746 253 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 IGKV1D-12P01611 117 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 PMP2P02689 132 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 RRASP10301 218 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 AMY2BP19961 511 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 NKX6-1P78426 367 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 SORDQ00796 357 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 PPP1R1AQ13522 171 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 MPV17LQ2QL34 196 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 FAM76BQ5HYJ3 339 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 FIP1L1Q6UN15 594 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 GSG1LQ6UXU4 331 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 SLAMF9Q96A28 289 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 PECRQ9BY49 303 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 SPACA1Q9HBV2 294 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 EDARQ9UNE0 448 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 HEATR1Q9H583 2144 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 A0A1B0GW55 424 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 IGHV3-13P01766 116 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 SFTPBP07988 381 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 DUX4L2P0CJ85 424 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 DUX4L3P0CJ86 424 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 DUX4L4P0CJ87 422 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 DUX4L5P0CJ88 424 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 DUX4L6P0CJ89 424 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 DUX4L7P0CJ90 424 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 TAF9Q16594 264 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 PEG10Q86TG7 708 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 PDCD10Q9BUL8 212 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 FGF23Q9GZV9 251 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 ESRP2Q9H6T0 727 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 DUX4Q9UBX2 424 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 ERRFI1Q9UJM3 462 aaPredicted RBP15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 GPR132Q9UNW8 380 aa15.5■□□□□ 0.07
CCDC88C-203ENST00000389856 TRAV14DV4A0A0A6YYC5 116 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 ATP6V1G2-DDX39BF2Z307 99 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 PDCD6O75340 191 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 BCL3P20749 454 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 UBA52P62987 128 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 NKAPLQ5M9Q1 402 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 ZNF546Q86UE3 836 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 COMMD7Q86VX2 200 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 LHFPL1Q86WI0 220 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 KCNRGQ8N5I3 272 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 CA5BP1Q8WTZ4 195 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 KCNJ16Q9NPI9 418 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 DUSP13Q9UII6 198 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 BOD1L1Q8NFC6 3051 aa15.49■□□□□ 0.07
CCDC88C-203ENST00000389856 POLEQ07864 2286 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 DBX1A6NMT0 343 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 SHOXO15266 292 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 ACAA1P09110 424 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 FUT3P21217 361 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 IL13RA2Q14627 380 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 C11orf87Q6NUJ2 197 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 PCSK4Q6UW60 755 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 CCDC28AQ8IWP9 274 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 WDR89Q96FK6 387 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 EPG5Q9HCE0 2579 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 ATMQ13315 3056 aa15.48■□□□□ 0.07
CCDC88C-203ENST00000389856 A0A1B0GWJ7 208 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 FAM90A27PA6NNH2 459 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 GEMIN2O14893 280 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 CHATP28329 748 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 ALKBH6Q3KRA9 238 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 PIGYQ3MUY2 71 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 SLC22A25Q6T423 547 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 FAM58AQ8N1B3 248 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 SCCPDHQ8NBX0 429 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 GALNT11Q8NCW6 608 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 OR5AP2Q8NGF4 316 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 MARCH1Q8TCQ1 289 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 TMEM171Q8WVE6 324 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 CNTNAP3BQ96NU0 1288 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 CNTNAP3Q9BZ76 1288 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 NMES1Q9C002 83 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 ZNF442Q9H7R0 627 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 MTCH1Q9NZJ7 389 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 TNFSF18Q9UNG2 199 aa15.47■□□□□ 0.07
CCDC88C-203ENST00000389856 IGLV3-9A0A075B6K5 115 aa15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 OR7C1O76099 320 aaPredicted RBP15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 NPBWR2P48146 333 aa15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 SNU13P55769 128 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 C17orf107Q6ZR85 190 aa15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 COQ8AQ8NI60 647 aa15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 EMG1Q92979 244 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 DHRS9Q9BPW9 319 aa15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 PPA2Q9H2U2 334 aa15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 RAB18Q9NP72 206 aa15.46■□□□□ 0.07
CCDC88C-203ENST00000389856 ABCD4O14678 606 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 SYNGR1O43759 233 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 SFT2D2O95562 160 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 GLAP06280 429 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 THBDP07204 575 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 AKR1C4P17516 323 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 PRKACAP17612 351 aa15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms