RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 C2orf68Q2NKX9 166 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 HEPN1Q6WQI6 88 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 Q6ZTK2 550 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 OR51A2Q8NGJ7 313 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 OR4P4Q8NGL7 312 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 CNIH3Q8TBE1 160 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 GPR148Q8TDV2 347 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 CPNE2Q96FN4 548 aaPredicted RBP17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 ZNF702PQ9H963 129 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 PITPNC1Q9UKF7 332 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 FOXJ3Q9UPW0 622 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 HILPDAQ9Y5L2 63 aa17.49■□□□□ 0.39
CCDC28B-201ENST00000373602 IRGMA1A4Y4 181 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 ODAMA1E959 279 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 PRAMEF5Q5TYX0 476 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 OR2G6Q5TZ20 316 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 OR52W1Q6IF63 320 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 TMPRSS11AQ6ZMR5 421 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 RTN4RL2Q86UN3 420 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 Q8N2B8 174 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 KLHDC1Q8N7A1 406 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 NDNFQ8TB73 568 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 COQ2Q96H96 371 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 NKX3-1Q99801 234 aaPredicted RBP17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 C8orf4Q9NR00 106 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 TAS2R4Q9NYW5 299 aa17.48■□□□□ 0.39
CCDC28B-201ENST00000373602 CMYA5Q8N3K9 4069 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 GABRPO00591 440 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 MAGEB3O15480 346 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 CD2P06729 351 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 JUNBP17275 347 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 CDK2P24941 298 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 HTR1DP28221 377 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 SLC34A1Q06495 639 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 LRRC36Q1X8D7 754 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 KRBOX4Q5JUW0 171 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 TTC23Q5W5X9 447 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 BAIAP2L2Q6UXY1 529 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 TMEM219Q86XT9 240 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 ABHD12Q8N2K0 398 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 PACRGLQ8N7B6 248 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 TNFAIP8L1Q8WVP5 186 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 CFHR4Q92496 578 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 DIMT1Q9UNQ2 313 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 EXOSC1Q9Y3B2 195 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 SIRT4Q9Y6E7 314 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 KIAA2026Q5HYC2 2103 aa17.47■□□□□ 0.39
CCDC28B-201ENST00000373602 FAM90A22PA8MWA6 464 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 F2RL2O00254 374 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 OGG1O15527 345 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 CD34P28906 385 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 GDNFP39905 211 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 ADARB1P78563 741 aaKnown RBP17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 BDH1Q02338 343 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 ATXN7L3Q14CW9 347 aaPredicted RBP17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 ASCL4Q6XD76 172 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 SATL1Q86VE3 508 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 Q8NFD4 153 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 OR51T1Q8NGJ9 327 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 CYGBQ8WWM9 190 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 GPER1Q99527 375 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 BABAM2Q9NXR7 383 aa17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 TET2Q6N021 2002 aaPredicted RBP17.46■□□□□ 0.39
CCDC28B-201ENST00000373602 H0YJX3 145 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 ALDOBP05062 364 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 CSF1P09603 554 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 MYL12AP19105 171 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 PTGFRP43088 359 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 IL13RA2Q14627 380 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 SETD9Q8NE22 299 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 FAM110DQ8TAY7 271 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 ZNF596Q8TC21 504 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 TMEM106AQ96A25 262 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 SMIM19Q96E16 107 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 NR1H4Q96RI1 486 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 PPIL3Q9H2H8 161 aaKnown RBP17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 SERTAD4Q9NUC0 356 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 ING3Q9NXR8 418 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 OR6C3Q9NZP0 311 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 DPM3Q9P2X0 92 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 CLEC2DQ9UHP7 191 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 ZNF281Q9Y2X9 895 aa17.45■□□□□ 0.38
CCDC28B-201ENST00000373602 TRAV24A0A0B4J272 114 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 ZNF729A6NN14 1252 aaPredicted RBP17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 LALBAP00709 142 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 IGLV1-47P01700 117 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 VSIG10L2P0DP72 767 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 HABP2Q14520 560 aaPredicted RBP17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 C17orf58Q2M2W7 97 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 DHRSXQ8N5I4 330 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 C11orf44Q8N8P7 122 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 OR4D6Q8NGJ1 314 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 TMEM80Q96HE8 168 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 PRSS22Q9GZN4 317 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 NCOR1P1Q9H4R4 102 aa17.44■□□□□ 0.38
CCDC28B-201ENST00000373602 A0A087X0M5 115 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 A0A1B0GX30 115 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 FAM172BPA6NC97 362 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 CGB3P0DN86 165 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 CGB7P0DN87 165 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms