RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 SLITRK2Q9H156 845 aa12.51□□□□□ -0.41
UBE3B-201ENST00000340074 METTL8Q9H825 291 aaKnown RBP12.51□□□□□ -0.41
UBE3B-201ENST00000340074 TRAV24A0A0B4J272 114 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 IGHV1-69DA0A0B4J2H0 117 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 RNASEK-C17orf49H0YIS7 233 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 CCRL2O00421 344 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 HSPB6O14558 160 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 ARL6IP5O75915 188 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 IGHV1-69P01742 117 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 GTF2F2P13984 249 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 PRTN3P24158 256 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 CALRP27797 417 aaKnown RBP12.5□□□□□ -0.41
UBE3B-201ENST00000340074 RBM11P57052 281 aaKnown RBP12.5□□□□□ -0.41
UBE3B-201ENST00000340074 BPIFB3P59826 476 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 KLRD1Q13241 179 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 GPR176Q14439 515 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 NHLRC3Q5JS37 347 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 GLT8D1Q68CQ7 371 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 METAP1DQ6UB28 335 aaPredicted RBP12.5□□□□□ -0.41
UBE3B-201ENST00000340074 USP43Q70EL4 1123 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 TCF23Q7RTU1 214 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 C11orf42Q8N5U0 333 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 SIGLECL1Q8N7X8 197 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 TNFRSF14Q92956 283 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 FOXRED1Q96CU9 486 aaPredicted RBP12.5□□□□□ -0.41
UBE3B-201ENST00000340074 PCDHB16Q9NRJ7 776 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 ZNF581Q9P0T4 197 aa12.5□□□□□ -0.41
UBE3B-201ENST00000340074 A0A0A6YYJ9 748 aa12.49□□□□□ -0.41
UBE3B-201ENST00000340074 GEMIN2O14893 280 aaKnown RBP12.49□□□□□ -0.41
UBE3B-201ENST00000340074 VENTXO95231 258 aa12.49□□□□□ -0.41
UBE3B-201ENST00000340074 CSN2P05814 226 aa12.49□□□□□ -0.41
UBE3B-201ENST00000340074 ERP29P30040 261 aaKnown RBP12.49□□□□□ -0.41
UBE3B-201ENST00000340074 DLX6P56179 175 aa12.49□□□□□ -0.41
UBE3B-201ENST00000340074 P2RX3P56373 397 aa12.49□□□□□ -0.41
UBE3B-201ENST00000340074 ERVFRD-1P60508 538 aa12.49□□□□□ -0.41
UBE3B-201ENST00000340074 MEF2CQ06413 473 aaPredicted RBP12.49□□□□□ -0.41
UBE3B-201ENST00000340074 AESQ08117 197 aa12.49□□□□□ -0.41
UBE3B-201ENST00000340074 UNKLQ9H9P5 680 aaKnown RBP12.49□□□□□ -0.41
UBE3B-201ENST00000340074 ING3Q9NXR8 418 aa12.49□□□□□ -0.41
UBE3B-201ENST00000340074 MDFIC2A0A1B0GVS7 189 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 hADV38S2A0JD32 116 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 OR7C1O76099 320 aaPredicted RBP12.48□□□□□ -0.41
UBE3B-201ENST00000340074 ZNF728P0DKX0 622 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 GLIPR1P48060 266 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 HILS1P60008 231 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 GUCA2AQ02747 115 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 ATXN7L3Q14CW9 347 aaPredicted RBP12.48□□□□□ -0.41
UBE3B-201ENST00000340074 TAF9Q16594 264 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 PAN3Q58A45 887 aaKnown RBP12.48□□□□□ -0.41
UBE3B-201ENST00000340074 KRBOX4Q5JUW0 171 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 C1orf100Q5SVJ3 147 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 NCR3LG1Q68D85 454 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 CD200R1LQ6Q8B3 271 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 TMEM104Q8NE00 496 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 COQ2Q96H96 371 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 ZNF714Q96N38 554 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 GFI1Q99684 422 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 BANF2Q9H503 90 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 ESM1Q9NQ30 184 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 AK6Q9Y3D8 172 aaKnown RBP12.48□□□□□ -0.41
UBE3B-201ENST00000340074 LINC00312Q9Y6C7 94 aa12.48□□□□□ -0.41
UBE3B-201ENST00000340074 TRDV1A0A1B0GX56 115 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 hCG_1809904A0A1W2PP81 198 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 A0A1W2PPE2 198 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 A0A1W2PR64 198 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 A0A1W2PRD5 423 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 A0A1W2PRF3 423 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 A0A1W2PRM7 423 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 A0A1W2PRV1 198 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 FUOMA2VDF0 154 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 C17orf98A8MV24 154 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 CRTAPO75718 401 aaPredicted RBP12.47□□□□□ -0.41
UBE3B-201ENST00000340074 TNFAIP8O95379 198 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 CD37P11049 281 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 MGMTP16455 207 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 NEDD8Q15843 81 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 MPV17LQ2QL34 196 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 DEFB112Q30KQ8 113 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 HCP5Q6MZN7 132 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 RBMS3Q6XE24 437 aaKnown RBP12.47□□□□□ -0.41
UBE3B-201ENST00000340074 TRAPPC6BQ86SZ2 158 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 LINC00596Q86U02 117 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 PNKDQ8N490 385 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 PIP4P2Q8N4L2 257 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 SUMF2Q8NBJ7 301 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 FAM46BQ96A09 425 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 MRPS24Q96EL2 167 aaKnown RBP12.47□□□□□ -0.41
UBE3B-201ENST00000340074 MDFIQ99750 246 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 IFT22Q9H7X7 185 aa12.47□□□□□ -0.41
UBE3B-201ENST00000340074 GALP22466 123 aa12.46□□□□□ -0.41
UBE3B-201ENST00000340074 HTR2CP28335 458 aa12.46□□□□□ -0.41
UBE3B-201ENST00000340074 KRTAP24-1Q3LI83 254 aa12.46□□□□□ -0.41
UBE3B-201ENST00000340074 ZNF782Q6ZMW2 699 aaPredicted RBP12.46□□□□□ -0.41
UBE3B-201ENST00000340074 JMJD8Q96S16 334 aa12.46□□□□□ -0.41
UBE3B-201ENST00000340074 DPCDQ9BVM2 203 aaPredicted RBP12.46□□□□□ -0.41
UBE3B-201ENST00000340074 SELENOIQ9C0D9 397 aa12.46□□□□□ -0.41
UBE3B-201ENST00000340074 GHRLQ9UBU3 117 aa12.46□□□□□ -0.41
UBE3B-201ENST00000340074 UBE2J1Q9Y385 318 aaPredicted RBP12.46□□□□□ -0.41
UBE3B-201ENST00000340074 COL6A5A8TX70 2615 aa12.46□□□□□ -0.42
UBE3B-201ENST00000340074 TRGV10A0A0A0MS01 117 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms