RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 GUCD1Q96NT3 240 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 K7EQS6 105 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 MPDU1O75352 247 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 MOSPD3O75425 235 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 AFMIDQ63HM1 303 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 OR8I2Q8N0Y5 310 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 PROCRQ9UNN8 238 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 HMGN4O00479 90 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 RPS4XP62701 263 aaKnown RBP11.47□□□□□ -0.57
USP47-202ENST00000339865 CDX2Q99626 313 aaPredicted RBP11.47□□□□□ -0.57
USP47-202ENST00000339865 FAM74A7A6NL05 159 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 GUCA2BQ16661 112 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 LDLRAD3Q86YD5 345 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 NID2Q14112 1375 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 A0A1B0GX78 115 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 MICBQ29980 383 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 FAM74A3Q4VXF1 159 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 OR8B3Q8NGG8 313 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 COPS9Q8WXC6 57 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 RAB33BQ9H082 229 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 MRPS16Q9Y3D3 137 aaKnown RBP11.47□□□□□ -0.57
USP47-202ENST00000339865 OR2W1Q9Y3N9 320 aa11.47□□□□□ -0.57
USP47-202ENST00000339865 Q6ZSR9 355 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 TMEM183AQ8IXX5 376 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 PRDM14Q9GZV8 571 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 TLCD2A6NGC4 264 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 JOSD1Q15040 202 aaPredicted RBP11.46□□□□□ -0.57
USP47-202ENST00000339865 BCORP1Q8N888 145 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 SIGLEC11Q96RL6 698 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 GLRX2Q9NS18 164 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 PARP4Q9UKK3 1724 aaKnown RBP11.46□□□□□ -0.57
USP47-202ENST00000339865 ZNF98A6NK75 572 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 FUT3P21217 361 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 GPR3P46089 330 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 FAM174AQ8TBP5 190 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 TMEM204Q9BSN7 226 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 DOCK5Q9H7D0 1870 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 CLEC18BQ6UXF7 455 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 C16orf82Q7Z2V1 217 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 GBGT1Q8N5D6 347 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 MRPL16Q9NX20 251 aaKnown RBP11.46□□□□□ -0.57
USP47-202ENST00000339865 FOXJ2Q9P0K8 574 aa11.46□□□□□ -0.57
USP47-202ENST00000339865 MROH1Q8NDA8 1641 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 FIGNL2A6NMB9 653 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 GNG7O60262 68 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 SLCO2B1O94956 709 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 WNT1P04628 370 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 MFAP2P55001 183 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 POLR2GP62487 172 aaKnown RBP eCLIP11.46□□□□□ -0.58
USP47-202ENST00000339865 SMAGPQ0VAQ4 97 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 SPTAN1Q13813 2472 aaKnown RBP11.46□□□□□ -0.58
USP47-202ENST00000339865 ZNF324BQ6AW86 544 aaPredicted RBP11.46□□□□□ -0.58
USP47-202ENST00000339865 FAM109BQ6ICB4 259 aaPredicted RBP11.46□□□□□ -0.58
USP47-202ENST00000339865 MAVSQ7Z434 540 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 TXNRD2Q9NNW7 524 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 ADAMTS5Q9UNA0 930 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 NGFP01138 241 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 CKS2P33552 79 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 PFN3P60673 137 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 IL13RA2Q14627 380 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 C6orf15Q6UXA7 325 aaPredicted RBP11.46□□□□□ -0.58
USP47-202ENST00000339865 RPS19BP1Q86WX3 136 aaKnown RBP11.46□□□□□ -0.58
USP47-202ENST00000339865 WDFY1Q8IWB7 410 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 ALG14Q96F25 216 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 UQCR10Q9UDW1 63 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 ANKRD36CQ5JPF3 1778 aa11.46□□□□□ -0.58
USP47-202ENST00000339865 H3BQ15 152 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 EIF4E2O60573 245 aaKnown RBP11.45□□□□□ -0.58
USP47-202ENST00000339865 PPP1CAP62136 330 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 TMEM101Q96IK0 257 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 OXGR1Q96P68 337 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 WNT5BQ9H1J7 359 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 UBR2Q8IWV8 1755 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 LNP1A1A4G5 178 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 C7orf77A4D0Y5 90 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 ICOSLGO75144 302 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 IL4P05112 153 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 LGALS3P17931 250 aaKnown RBP11.45□□□□□ -0.58
USP47-202ENST00000339865 CDX1P47902 265 aaPredicted RBP11.45□□□□□ -0.58
USP47-202ENST00000339865 CD81P60033 236 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 FUNDC1Q8IVP5 155 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 NUDT8Q8WV74 236 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 NEURL2Q9BR09 285 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 HDHD3Q9BSH5 251 aaPredicted RBP11.45□□□□□ -0.58
USP47-202ENST00000339865 TARBP1Q13395 1621 aaKnown RBP11.45□□□□□ -0.58
USP47-202ENST00000339865 TRBV23-1A0A0A0MS06 115 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 FCMRO60667 390 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 BTG2P78543 158 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 ELFN2Q5R3F8 820 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.45□□□□□ -0.582e-6■■■■□ 23.7
USP47-202ENST00000339865 RGP1Q92546 391 aaPredicted RBP11.45□□□□□ -0.58
USP47-202ENST00000339865 TEX101Q9BY14 249 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 RTN4RQ9BZR6 473 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 R4GN57 208 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 PDCD11Q14690 1871 aaKnown RBP11.45□□□□□ -0.58
USP47-202ENST00000339865 IGKV6D-41A0A0C4DH26 115 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 H3BMH7 237 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 LANCL1O43813 399 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 NDUFB6O95139 128 aa11.45□□□□□ -0.58
USP47-202ENST00000339865 KIR3DL2P43630 455 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms