RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CD276Q5ZPR3 534 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 Q6ZS49 121 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 TERB2Q8NHR7 220 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 CA5BP1Q8WTZ4 195 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 LRRC46Q96FV0 321 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 RBM14Q96PK6 669 aaKnown RBP13.07□□□□□ -0.32
LIMS1-202ENST00000338045 ESRP2Q9H6T0 727 aaKnown RBP13.07□□□□□ -0.32
LIMS1-202ENST00000338045 NDRG3Q9UGV2 375 aa13.07□□□□□ -0.32
LIMS1-202ENST00000338045 DEGS1O15121 323 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 EIF2B2P49770 351 aaKnown RBP13.06□□□□□ -0.32
LIMS1-202ENST00000338045 CDK10Q15131 360 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 GRK1Q15835 563 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF626Q68DY1 528 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 MEGF10Q96KG7 1140 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 MED28Q9H204 178 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 PPA2Q9H2U2 334 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 UFSP2Q9NUQ7 469 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 EHFQ9NZC4 300 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 VSIG4Q9Y279 399 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 RELNP78509 3460 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 FAM221AA4D161 298 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 SHISA9B4DS77 424 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 GRNP28799 593 aaKnown RBP13.06□□□□□ -0.32
LIMS1-202ENST00000338045 GATA4P43694 442 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF81P51508 661 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 RBM39Q14498 530 aaKnown RBP13.06□□□□□ -0.32
LIMS1-202ENST00000338045 FCN2Q15485 313 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 SHEQ5VZ18 495 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 ADAM5Q6NVV9 412 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 ACP7Q6ZNF0 438 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 TMEM17Q86X19 198 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 DMRTC2Q8IXT2 367 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-202ENST00000338045 OR10Z1Q8NGY1 313 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 OR2V2Q96R30 315 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 SEC22CQ9BRL7 303 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 DPCDQ9BVM2 203 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-202ENST00000338045 RIMS4Q9H426 269 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF286AQ9HBT8 521 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 GPN1Q9HCN4 374 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-202ENST00000338045 KCNJ16Q9NPI9 418 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 TREM2Q9NZC2 230 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 ATP23Q9Y6H3 246 aa13.06□□□□□ -0.32
LIMS1-202ENST00000338045 TRBV6-6A0A0A6YYG2 114 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 B8ZZF3 427 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 RGS13O14921 159 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 SPRY3O43610 288 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 OR2H2O95918 312 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 OR4A8P0C604 315 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF44P15621 663 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 TSPAN5P62079 268 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 TFF3Q07654 80 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 ZNF660Q6AZW8 331 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-202ENST00000338045 FAM122CQ6P4D5 195 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 GALNT11Q8NCW6 608 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 CCDC107Q8WV48 283 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 RDH5Q92781 318 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 PLPPR2Q96GM1 343 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 WDR13Q9H1Z4 485 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 FN3KRPQ9HA64 309 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 C1orf123Q9NWV4 160 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 ZDHHC8Q9ULC8 765 aa13.05□□□□□ -0.32
LIMS1-202ENST00000338045 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 A8MV72 311 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SLC33A1O00400 549 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SDCBPO00560 298 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 HS3ST1O14792 307 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SH2D1BO14796 132 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 WNT9BO14905 357 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 IGHV1-46P01743 117 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 ADH4P08319 380 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SULT1A3P0DMM9 295 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SULT1A4P0DMN0 295 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 GLRA1P23415 457 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 LMO1P25800 156 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 AADACL3Q5VUY0 350 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SLC38A6Q8IZM9 456 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 OR11H7Q8NGC8 314 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 LINC01560Q8TB33 94 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 DACT3Q96B18 629 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 RANGRFQ9HD47 186 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 Q9N2K0 584 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 IL19Q9UHD0 177 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 POM121CA8CG34 1229 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SRRM5B3KS81 715 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 HSPB6O14558 160 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 KALRNO60229 2985 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 CREBL2O60519 120 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 HAND1O96004 215 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 KNG1P01042 644 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 CD83Q01151 205 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SNTB1Q13884 538 aaKnown RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 C4orf17Q53FE4 359 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SPRNQ5BIV9 151 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 PEG10Q86TG7 708 aaKnown RBP13.04□□□□□ -0.32
LIMS1-202ENST00000338045 SLC25A42Q86VD7 318 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 TCTE3Q8IZS6 198 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 GAPTQ8N292 157 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 PRR7Q8TB68 274 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 NEK7Q8TDX7 302 aa13.04□□□□□ -0.32
LIMS1-202ENST00000338045 LRRC29Q8WV35 223 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms