RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 DIDO1Q9BTC0 2240 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 A0A1B0GU03 582 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 SERPINE3A8MV23 424 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 TSPAN2O60636 221 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 CLDN17P56750 224 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 CD81P60033 236 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 SHISA6Q6ZSJ9 500 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 OR4D5Q8NGN0 318 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 TMEM37Q8WXS4 190 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 NOL4LQ96MY1 436 aaPredicted RBP11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 VSIRQ9H7M9 311 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 B4DGG1 531 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 GZMHP20718 246 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 DAP3P51398 398 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 HNF4GQ14541 408 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 HLA-DQA1Q5Y7H0 255 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 SP5Q6BEB4 398 aaPredicted RBP11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 OR13H1Q8NG92 308 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 RCC1LQ96I51 464 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 ZNF407Q9C0G0 2248 aa11.68□□□□□ -0.54
CCDC88C-201ENST00000331194 GALR2O43603 387 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 IGKV3-11P04433 115 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 GABREP78334 506 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 ZNF266Q14584 549 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 BTNL3Q6UXE8 466 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 TIPARPQ7Z3E1 657 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 IGHV3-20A0A0C4DH32 117 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 PMS2P11Q13670 270 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 MAJINQ3KP22 176 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 NCR3LG1Q68D85 454 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 NAT6Q93015 286 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 SYT3Q9BQG1 590 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 ACTR3CQ9C0K3 210 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 CDH20Q9HBT6 801 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 ASCL3Q9NQ33 180 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 PLA2G3Q9NZ20 509 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 CLEC1BQ9P126 229 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 LRFN1Q9P244 771 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 LAMP3Q9UQV4 416 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 RALGAPA1Q6GYQ0 2036 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 DOCK11Q5JSL3 2073 aa11.67□□□□□ -0.54
CCDC88C-201ENST00000331194 CTSEP14091 401 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 CD33P20138 364 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 KIR2DL1P43626 348 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 NKX2-1P43699 371 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 CLRN1P58418 232 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 GNB2P62879 340 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 PAX5Q02548 391 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 ZNF66Q6ZN08 573 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 SSX7Q7RTT5 188 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 SLC22A18ASQ8N1D0 253 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 BEND2Q8NDZ0 799 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 OR10A7Q8NGE5 316 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 PGAM5Q96HS1 289 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 ELOVL1Q9BW60 279 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 SERINC1Q9NRX5 453 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 DECR2Q9NUI1 292 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 A0A1B0GUS0 222 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 LOC102723971A0A1B0GUV8 181 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 RND2P52198 227 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 RTP5Q14D33 572 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 ABLIM2Q6H8Q1 611 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 CHST11Q9NPF2 352 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 PNRC2Q9NPJ4 139 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 SOHLH2Q9NX45 425 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 B3GAT1Q9P2W7 334 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 ZNF814B7Z6K7 855 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 EFNA2O43921 213 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 CYB5R3P00387 301 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 AKT2P31751 481 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 D2HGDHQ8N465 521 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 RSG1Q9BU20 258 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 WWTR1Q9GZV5 400 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 C11orf1Q9H5F2 150 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 GPR173Q9NS66 373 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 NECAP2Q9NVZ3 263 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 PIGLQ9Y2B2 252 aa11.66□□□□□ -0.54
CCDC88C-201ENST00000331194 A0A1W2PNR3 127 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 RRP8O43159 456 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 HSPA12AO43301 675 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 CNOT4O95628 575 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 ELLP55199 621 aaPredicted RBP11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 ADIRFQ15847 76 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 DOK3Q7L591 496 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 R3HDM4Q96D70 268 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 ZDBF2Q9HCK1 2354 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 CABIN1Q9Y6J0 2220 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 A0A1W2PQF6 199 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 ADAM20O43506 726 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 PITX3O75364 302 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 AADACP22760 399 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 WNT5AP41221 380 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 RPL29P47914 159 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 GFERP55789 205 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 PIGYQ3MUY2 71 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 RTL6Q6ICC9 239 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 Q6ZPA2 131 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 MRPL41Q8IXM3 137 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 RNASEH2CQ8TDP1 164 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 SDF2L1Q9HCN8 221 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms