RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 NKX2-6A6NCS4 301 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 ZNF587BE7ETH6 402 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 SRP19P09132 144 aaKnown RBP11.63□□□□□ -0.55
SKA3-202ENST00000314759 AADACP22760 399 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 CRYGSP22914 178 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 FKBP2P26885 142 aaKnown RBP11.63□□□□□ -0.55
SKA3-202ENST00000314759 UCP3P55916 312 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 ASCL4Q6XD76 172 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 SUMF1Q8NBK3 374 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 TMEM171Q8WVE6 324 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 CCDC85CA6NKD9 419 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 ZNF724A8MTY0 619 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 NPIPA2E9PIF3 369 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 NPIPA3F8WFD2 350 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 RPL36A-HNRNPH2H7BZ11 118 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 TRGC1P0CF51 173 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 OMGP23515 440 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 OR2T2Q6IF00 324 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 ZNF429Q86V71 674 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 CYB561D1Q8N8Q1 229 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 FRZBQ92765 325 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 MISP3Q96FF7 219 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 DEFB126Q9BYW3 111 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 ZNF286AQ9HBT8 521 aa11.63□□□□□ -0.55
SKA3-202ENST00000314759 FOXD3Q9UJU5 478 aaPredicted RBP11.63□□□□□ -0.55
SKA3-202ENST00000314759 SCRG1O75711 98 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 ONECUT2O95948 504 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 RGS19P49795 217 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 OSR2Q8N2R0 312 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 BORCS8Q96FH0 119 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 IER2Q9BTL4 223 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 ST3GAL6Q9Y274 331 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 SDK2Q58EX2 2172 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 C3orf85A0A1B0GTC6 90 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 BTBD17A6NE02 478 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 OR5H1A6NKK0 313 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 MPPED1O15442 326 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 TAS2R60P59551 318 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 NKX6-1P78426 367 aaPredicted RBP11.62□□□□□ -0.55
SKA3-202ENST00000314759 ZNF266Q14584 549 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 CNN3Q15417 329 aaKnown RBP11.62□□□□□ -0.55
SKA3-202ENST00000314759 FAM27BQ5VT28 67 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 ZIC4Q8N9L1 334 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 CADM4Q8NFZ8 388 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 OR14L1PQ8NHC6 308 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 ULBP2Q9BZM5 246 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 BCO1Q9HAY6 547 aa11.62□□□□□ -0.55
SKA3-202ENST00000314759 PKIAP61925 76 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 ZNF774Q6NX45 483 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 CCDC71LQ8N9Z2 235 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 SNIP1Q8TAD8 396 aaKnown RBP11.61□□□□□ -0.55
SKA3-202ENST00000314759 ZNF700Q9H0M5 742 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 PROB1E7EW31 1015 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 SYNGR3O43761 229 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 CDS2O95674 445 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 PPYP01298 95 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 HERV-K104P61576 105 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 SP5Q6BEB4 398 aaPredicted RBP11.61□□□□□ -0.55
SKA3-202ENST00000314759 MAML2Q8IZL2 1156 aaPredicted RBP11.61□□□□□ -0.55
SKA3-202ENST00000314759 CPNE4Q96A23 557 aaPredicted RBP11.61□□□□□ -0.55
SKA3-202ENST00000314759 MAGT1Q9H0U3 335 aa11.61□□□□□ -0.55
SKA3-202ENST00000314759 AKIRIN1Q9H9L7 192 aaPredicted RBP11.61□□□□□ -0.55
SKA3-202ENST00000314759 TRDCB7Z8K6 153 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 PITX3O75364 302 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 NRASP01111 189 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 LCATP04180 440 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 NKX2-1P43699 371 aaPredicted RBP11.6□□□□□ -0.55
SKA3-202ENST00000314759 ICAM4Q14773 271 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 LHFPL2Q6ZUX7 228 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 TMEM252Q8N6L7 170 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 TMEM222Q9H0R3 208 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 A0A087WWC5 75 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 ARGFXA6NJG6 315 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 VAMP5O95183 116 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 MDKP21741 143 aaPredicted RBP11.6□□□□□ -0.55
SKA3-202ENST00000314759 GNRHRP30968 328 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 MRPS34P82930 218 aaKnown RBP11.6□□□□□ -0.55
SKA3-202ENST00000314759 CXorf66Q5JRM2 361 aaPredicted RBP11.6□□□□□ -0.55
SKA3-202ENST00000314759 ZNF385CQ66K41 422 aaPredicted RBP11.6□□□□□ -0.55
SKA3-202ENST00000314759 ODF3L1Q8IXM7 274 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 PLEKHF2Q9H8W4 249 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 UNKLQ9H9P5 680 aaKnown RBP11.6□□□□□ -0.55
SKA3-202ENST00000314759 GLRX2Q9NS18 164 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 KIAA1456Q9P272 454 aa11.6□□□□□ -0.55
SKA3-202ENST00000314759 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.59□□□□□ -0.55
SKA3-202ENST00000314759 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.59□□□□□ -0.55
SKA3-202ENST00000314759 SSSCA1O60232 199 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 PDCD6O75340 191 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 PATE4P0C8F1 98 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 TCN2P20062 427 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 GLIPR1P48060 266 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 DAZAP2Q15038 168 aaPredicted RBP11.59□□□□□ -0.55
SKA3-202ENST00000314759 RAB35Q15286 201 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 RAET1LQ5VY80 246 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 TMEM42Q69YG0 159 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 P4HA3Q7Z4N8 544 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 C5orf24Q7Z6I8 188 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 OR5C1Q8NGR4 320 aa11.59□□□□□ -0.55
SKA3-202ENST00000314759 LYRM2Q9NU23 88 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms