RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZNF793Q6ZN11 406 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 OR10G4Q8NGN3 311 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CTHRC1Q96CG8 243 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 MS4A7Q9GZW8 240 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 KLK11Q9UBX7 282 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TMEM265A0A087WTH1 108 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 A0A1W2PPV9 198 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TCRBV16S1A1N1A0A5B0 115 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CDC14CA4D256 554 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TMEM202A6NGA9 273 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 CTSDP07339 412 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 SMIM10L1P0DMW3 83 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 DDTP30046 118 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 ARR3P36575 388 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 NTHL1P78549 312 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 FAM166AQ6J272 317 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 DOK3Q7L591 496 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 TEX29Q8N6K0 151 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 ZNF784Q8NCA9 323 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 PP6455Q8WZ26 134 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 SMIM10Q96HG1 83 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 ADTRPQ96IZ2 230 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 B3GAT1Q9P2W7 334 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 NAT8Q9UHE5 227 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 ZFP30Q9Y2G7 519 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 SIRT4Q9Y6E7 314 aaPredicted RBP5.7□□□□□ -1.5
VPS35-201ENST00000299138 WSB1Q9Y6I7 421 aa5.7□□□□□ -1.5
VPS35-201ENST00000299138 LOC390937A0A1W2PQ73 354 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 H7C1C5 153 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 SDCBPO00560 298 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 IGFBP6P24592 240 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 ZP2Q05996 745 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 MYBPHQ13203 477 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 MMP21Q8N119 569 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 DDA1Q9BW61 102 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 KIAA1456Q9P272 454 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 CGGBP1Q9UFW8 167 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 PIGLQ9Y2B2 252 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 NRASP01111 189 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 HRASP01112 189 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 KRASP01116 189 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 CISD3P0C7P0 127 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 CST6Q15828 149 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 PIGTQ969N2 578 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 TMEM230Q96A57 120 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 SLC35B3Q9H1N7 401 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 RCC2Q9P258 522 aaKnown RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 HCSTQ9UBK5 93 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 HS3ST3A1Q9Y663 406 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 NUMA1Q14980 2115 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 C9orf170A2RU37 121 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 H0YIG0 161 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 CST7O76096 145 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 EPPINO95925 133 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 F13BP05160 661 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 PTGER1P34995 402 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 AWAT1Q58HT5 328 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 C1orf185Q5T7R7 199 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 OR5AS1Q8N127 324 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 D2HGDHQ8N465 521 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 OR10A7Q8NGE5 316 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 PEX11GQ96HA9 241 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 PRRX2Q99811 253 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 TXNDC17Q9BRA2 123 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 ALKBH7Q9BT30 221 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 MEGF9Q9H1U4 602 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 EMC9Q9Y3B6 208 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 TMEM184BQ9Y519 407 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 GBF1Q92538 1859 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 ZNF737O75373 536 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 IGHMP01871 453 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 PTHLHP12272 177 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 RPS15P62841 145 aaKnown RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 FHL5Q5TD97 284 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 TBC1D26Q86UD7 250 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 LRRC29Q8WV35 223 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 ERGIC1Q969X5 290 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 ACY3Q96HD9 319 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 NMNAT3Q96T66 252 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 VN1R3Q9BXE9 311 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 COA4Q9NYJ1 87 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 APOBEC3BQ9UH17 382 aaKnown RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 BRCA1P38398 1863 aaKnown RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 A0A1B0GWB2 263 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 TIMM8AO60220 97 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 NXPH2O95156 264 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 LYPD3O95274 346 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 P04436 131 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 VSIG10L2P0DP72 767 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 PRF1P14222 555 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 ZNF93P35789 620 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 HTR5AP47898 357 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 ZP4Q12836 540 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 OR2T10Q8NGZ9 312 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 OR2T6Q8NHC8 308 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 BAHD1Q8TBE0 780 aaPredicted RBP5.69□□□□□ -1.5
VPS35-201ENST00000299138 LHX9Q9NQ69 397 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 TANC1Q9C0D5 1861 aa5.69□□□□□ -1.5
VPS35-201ENST00000299138 RCC1P18754 421 aaPredicted RBP5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms