RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 MYPOPQ86VE0 399 aaPredicted RBP11.71□□□□□ -0.53
SKA3-201ENST00000298260 SLC37A2Q8TED4 501 aa11.71□□□□□ -0.53
SKA3-201ENST00000298260 CCNL2Q96S94 520 aaPredicted RBP11.71□□□□□ -0.53
SKA3-201ENST00000298260 NUDT16L1Q9BRJ7 211 aaKnown RBP11.71□□□□□ -0.53
SKA3-201ENST00000298260 ADAMTS9Q9P2N4 1935 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 LOC102723971A0A1B0GUV8 181 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 NUPR1O60356 82 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 MT-ATP6P00846 226 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 FOSL2P15408 326 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 HSF1Q00613 529 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 TLE3Q04726 772 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 IL13RA2Q14627 380 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 RAB35Q15286 201 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 IZUMO4Q1ZYL8 232 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 ARSJQ5FYB0 599 aaPredicted RBP11.71□□□□□ -0.54
SKA3-201ENST00000298260 SLC38A9Q8NBW4 561 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 RNASEH2CQ8TDP1 164 aaKnown RBP11.71□□□□□ -0.54
SKA3-201ENST00000298260 BMFQ96LC9 184 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 WWTR1Q9GZV5 400 aa11.71□□□□□ -0.54
SKA3-201ENST00000298260 C2orf16Q68DN1 1984 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 GUSBP08236 651 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 CEACAM1P13688 526 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 RND2P52198 227 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 EFNA3P52797 238 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 WNT16Q9UBV4 365 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 DKKL1Q9UK85 242 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 CEBPZOSA8MTT3 80 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 F5H5K5 113 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 TK1P04183 234 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 CTHP32929 405 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 ZNF266Q14584 549 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 ZNF774Q6NX45 483 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 OR4D5Q8NGN0 318 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 LYZL4Q96KX0 146 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 SDF2L1Q9HCN8 221 aa11.7□□□□□ -0.54
SKA3-201ENST00000298260 AURKAIP1Q9NWT8 199 aaPredicted RBP11.7□□□□□ -0.54
SKA3-201ENST00000298260 RAB4AP20338 218 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 NKX2-1P43699 371 aaPredicted RBP11.69□□□□□ -0.54
SKA3-201ENST00000298260 ERVFC1-1P60608 527 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 DCAF7P61962 342 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 VAMP2P63027 116 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 TMEM256Q8N2U0 113 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 IL22RA1Q8N6P7 574 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 SDSLQ96GA7 329 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 SMDT1Q9H4I9 107 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 ASXL3Q9C0F0 2248 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 TMEM131Q92545 1883 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 ZNF705FA8MVS1 300 aaPredicted RBP11.69□□□□□ -0.54
SKA3-201ENST00000298260 ZNF705DP0CH99 300 aaPredicted RBP11.69□□□□□ -0.54
SKA3-201ENST00000298260 ZNF705BP0CI00 300 aaPredicted RBP11.69□□□□□ -0.54
SKA3-201ENST00000298260 OR3A1P47881 315 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 RPP30P78346 268 aaKnown RBP11.69□□□□□ -0.54
SKA3-201ENST00000298260 PLCXD2Q0VAA5 305 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 SP5Q6BEB4 398 aaPredicted RBP11.69□□□□□ -0.54
SKA3-201ENST00000298260 DEGS2Q6QHC5 323 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 SHISA6Q6ZSJ9 500 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 SLC16A14Q7RTX9 510 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 DNASE2BQ8WZ79 361 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 RPUSD4Q96CM3 377 aaKnown RBP11.69□□□□□ -0.54
SKA3-201ENST00000298260 RPRMQ9NS64 109 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 PCDH15Q96QU1 1955 aa11.69□□□□□ -0.54
SKA3-201ENST00000298260 TRBV24-1A0A075B6N3 115 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 ADAM20O43506 726 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 TCF21O43680 179 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 UCP3P55916 312 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 IGLV3-21P80748 117 aaPredicted RBP11.68□□□□□ -0.54
SKA3-201ENST00000298260 MRPS11P82912 194 aaKnown RBP11.68□□□□□ -0.54
SKA3-201ENST00000298260 TMEM267Q0VDI3 215 aaPredicted RBP11.68□□□□□ -0.54
SKA3-201ENST00000298260 NUP54Q7Z3B4 507 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 OOSP2Q86WS3 158 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 C9orf40Q8IXQ3 194 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 NOXO1Q8NFA2 376 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 ADIPOR1Q96A54 375 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 SERPINE3A8MV23 424 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 TOX3O15405 576 aaPredicted RBP11.68□□□□□ -0.54
SKA3-201ENST00000298260 POU2F2P09086 479 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 CTSEP14091 401 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 ZNF726P1Q15940 193 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 CST9LP1Q5W188 147 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 DNM1P34Q6PK57 102 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 MYOTQ9UBF9 498 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 ESPL1Q14674 2120 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 C5orf67F2Z3F1 127 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 HSPA12AO43301 675 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 GCGP01275 180 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 CST2P09228 141 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 SLC6A8P48029 635 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 PIGYQ3MUY2 71 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 SLC25A24Q6NUK1 477 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 ARMC6Q6NXE6 501 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 Q6ZPA2 131 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 IL22RA2Q969J5 263 aa11.68□□□□□ -0.54
SKA3-201ENST00000298260 TGOLN2O43493 480 aa11.67□□□□□ -0.54
SKA3-201ENST00000298260 PLRG1O43660 514 aaKnown RBP11.67□□□□□ -0.54
SKA3-201ENST00000298260 CHST1O43916 411 aa11.67□□□□□ -0.54
SKA3-201ENST00000298260 PITX3O75364 302 aa11.67□□□□□ -0.54
SKA3-201ENST00000298260 IGFBP4P22692 258 aa11.67□□□□□ -0.54
SKA3-201ENST00000298260 AADACP22760 399 aa11.67□□□□□ -0.54
SKA3-201ENST00000298260 FAM3BP58499 235 aaPredicted RBP11.67□□□□□ -0.54
SKA3-201ENST00000298260 SPIN3Q5JUX0 258 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms