RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SIRPAP78324 504 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 PCBP2Q15366 365 aaKnown RBP eCLIP2.5□□□□□ -2.011e-9■■■■■ 28.3
SCN1A-219ENST00000641575 OR7A5Q15622 319 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 LDLRAD1Q5T700 205 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 RNF113BQ8IZP6 322 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF784Q8NCA9 323 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 C8orf46Q8TAG6 207 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 FAM168AQ92567 244 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM191AQ9H0A3 160 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CNOT2Q9NZN8 540 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CACNG5Q9UF02 275 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZDHHC2Q9UIJ5 367 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TIMM10BQ9Y5J6 103 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF142P52746 1687 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1B0GUS0 222 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 PPP1R3DO95685 299 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CD160O95971 181 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 HOXD13P35453 343 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CNN1P51911 297 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 RXFP4Q8TDU9 374 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CYB5D2Q8WUJ1 264 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM106AQ96A25 262 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GNPNAT1Q96EK6 184 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MS4A4EQ96PG1 132 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 C2orf88Q9BSF0 95 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 NECAP2Q9NVZ3 263 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 LOC100289279A0A1B0GTE1 492 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TCRBV3S1A0A5B6 114 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 LILRA5A6NI73 299 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ATP5J2P56134 94 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 PLPPR5Q32ZL2 321 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 DPY19L2P2Q6ZN68 376 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 Q6ZVU0 165 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM251Q8N6I4 163 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TSACCQ96A04 125 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 SCMH1Q96GD3 660 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 DOK1Q99704 481 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZDHHC18Q9NUE0 388 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ST3GAL6Q9Y274 331 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 AHRRA9YTQ3 701 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 F8WEM9 126 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MT-CO3P00414 261 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 HKR1P10072 659 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ARSAP15289 507 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 SLC25A1P53007 311 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 WDR25Q64LD2 544 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CYHR1Q6ZMK1 362 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF429Q86V71 674 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MORN4Q8NDC4 146 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 P2RY11Q96G91 374 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 SNX22Q96L94 193 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CFHR5Q9BXR6 569 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 SLC6A13Q9NSD5 602 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 UQCR10Q9UDW1 63 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GPR52Q9Y2T5 361 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 STARD10Q9Y365 291 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MTCH2Q9Y6C9 303 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 V9GY05 133 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ADAMTS9Q9P2N4 1935 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 NDUFB2O95178 105 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CA2P00918 260 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CTSLP07711 333 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 RNASE1P07998 156 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CGB3P0DN86 165 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OPRK1P41145 380 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CKS1BP61024 79 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 SNRPGP62308 76 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 DLK1P80370 383 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 LRRC26Q2I0M4 334 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 STHQ8IWL8 128 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TMEFF1Q8IYR6 380 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF680Q8NEM1 530 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 IL17REQ8NFR9 667 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR10AG1Q8NH19 301 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM37Q8WXS4 190 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1W2PPC4 97 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR2W5A6NFC9 320 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 DIRC3C9JPN6 131 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF354AO60765 605 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 GP1BAP07359 652 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FCARP24071 287 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF691Q5VV52 312 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TRILQ7L0X0 811 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 LPPQ93052 612 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SLC25A21Q9BQT8 299 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR51B6Q9H340 312 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 NAT8BQ9UHF3 227 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 UBE2L5PA0A1B0GUS4 154 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 STATHP02808 62 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FGF2P09038 288 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CCR2P41597 374 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FUT6P51993 359 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PAX5Q02548 391 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SQSTM1Q13501 440 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ALKBH1Q13686 389 aaKnown RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SLC25A35Q3KQZ1 300 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 DEFB134Q4QY38 66 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PHLDA2Q53GA4 152 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SPANXN4Q5MJ08 99 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms