RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 DUX4L5P0CJ88 424 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 DUX4L6P0CJ89 424 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 DUX4L7P0CJ90 424 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 SERPINF1P36955 418 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 ERVS71-1P61550 626 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 GTF3C1Q12789 2109 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 ACSF3Q4G176 576 aaPredicted RBP13.4□□□□□ -0.26
CLN3-251ENST00000636853 SLC22A25Q6T423 547 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 ZNF546Q86UE3 836 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 Q8NFD4 153 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 ZNF488Q96MN9 340 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 DNTTIP1Q9H147 329 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 COMMD9Q9P000 198 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 DUX4Q9UBX2 424 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 KLF2Q9Y5W3 355 aaPredicted RBP13.4□□□□□ -0.26
CLN3-251ENST00000636853 PRKACAP17612 351 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 DUSP1P28562 367 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 FGF12P61328 243 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 ANKRD55Q3KP44 614 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 ZNF660Q6AZW8 331 aaPredicted RBP13.39□□□□□ -0.27
CLN3-251ENST00000636853 ASCL5Q7RTU5 278 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 SAXO1Q8IYX7 474 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 WNT2BQ93097 391 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 NECAP2Q9NVZ3 263 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 MGAQ8IWI9 3026 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 MPTX1A8MV57 137 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 TRAPPC2LH3BP13 241 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 SMPD2O60906 423 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 ADAP1O75689 374 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 AGFG2O95081 481 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 RPS2P15880 293 aaKnown RBP13.39□□□□□ -0.27
CLN3-251ENST00000636853 FGL1Q08830 312 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 ATXN7L3Q14CW9 347 aaPredicted RBP13.39□□□□□ -0.27
CLN3-251ENST00000636853 ELP2Q6IA86 826 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 TMEM200AQ86VY9 491 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 CXorf58Q96LI9 332 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 OR2J1Q9GZK6 312 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 CDH20Q9HBT6 801 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 C14orf166Q9Y224 244 aaKnown RBP13.39□□□□□ -0.27
CLN3-251ENST00000636853 MPC1Q9Y5U8 109 aa13.39□□□□□ -0.27
CLN3-251ENST00000636853 PRR14LQ5THK1 2151 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 K7EM74 188 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 HSPB6O14558 160 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 RPA2P15927 270 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 PPP1CBP62140 327 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 C11orf87Q6NUJ2 197 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 PDZD9Q8IXQ8 264 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 MKXQ8IYA7 352 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 LINC00518Q8N0U6 118 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 EXTL1Q92935 676 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 LUZP4Q9P127 313 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 DKK4Q9UBT3 224 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 INTS1Q8N201 2190 aaKnown RBP13.38□□□□□ -0.27
CLN3-251ENST00000636853 PTPRZ1P23471 2315 aaPredicted RBP13.38□□□□□ -0.27
CLN3-251ENST00000636853 PTGER4P35408 488 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 GNG3P63215 75 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 FLI1Q01543 452 aaPredicted RBP13.38□□□□□ -0.27
CLN3-251ENST00000636853 MRPL49Q13405 166 aaKnown RBP13.38□□□□□ -0.27
CLN3-251ENST00000636853 SURF2Q15527 256 aaPredicted RBP13.38□□□□□ -0.27
CLN3-251ENST00000636853 IGFL3Q6UXB1 125 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 GSG1LQ6UXU4 331 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 OR6K3Q8NGY3 331 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 TOMM40LQ969M1 308 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 SLC25A32Q9H2D1 315 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 ZNF286AQ9HBT8 521 aa13.38□□□□□ -0.27
CLN3-251ENST00000636853 AHRRA9YTQ3 701 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 STPG2Q8N412 459 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 COQ8AQ8NI60 647 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 WDR13Q9H1Z4 485 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 CHMP1AQ9HD42 196 aaPredicted RBP13.37□□□□□ -0.27
CLN3-251ENST00000636853 OR5B21A6NL26 309 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 FXYD4P59646 89 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 ALKBH6Q3KRA9 238 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 NSUN5P2Q63ZY6 315 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 TMEM211Q6ICI0 200 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 INO80CQ6PI98 192 aaPredicted RBP13.37□□□□□ -0.27
CLN3-251ENST00000636853 DHRS11Q6UWP2 260 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 FBXW12Q6X9E4 464 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 C5orf24Q7Z6I8 188 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 CCDC36Q8IYA8 594 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 OR1S1Q8NH92 325 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 SLC25A40Q8TBP6 338 aa13.37□□□□□ -0.27
CLN3-251ENST00000636853 DSPP15924 2871 aaKnown RBP13.36□□□□□ -0.27
CLN3-251ENST00000636853 CACNA1GO43497 2377 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 RHBDL1O75783 438 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 SLC25A4P12235 298 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 COX5AP20674 150 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 FCGR2CP31995 323 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 ECI1P42126 302 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 BEX5Q5H9J7 111 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 OR2A2Q6IF42 318 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 ZNF573Q86YE8 665 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 C17orf78Q8N4C9 275 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 ZNF610Q8N9Z0 462 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 WDR31Q8NA23 367 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 CLRN3Q8NCR9 226 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 OR1J1Q8NGS3 322 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 OPN3Q9H1Y3 402 aaPredicted RBP13.36□□□□□ -0.27
CLN3-251ENST00000636853 DECR2Q9NUI1 292 aa13.36□□□□□ -0.27
CLN3-251ENST00000636853 TNFSF18Q9UNG2 199 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms