RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 VPS13DQ5THJ4 4388 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 MAGEA13PA6NCF6 341 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 HAND1O96004 215 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 LYNP07948 512 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 IL24Q13007 206 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 KIAA0141Q14154 515 aaPredicted RBP11.23□□□□□ -0.61
CLN3-249ENST00000636685 SLC15A3Q8IY34 581 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 OR51E1Q8TCB6 317 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 MYOZ3Q8TDC0 251 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 TEAD3Q99594 435 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 ABCG5Q9H222 651 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 PCDHB16Q9NRJ7 776 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 MTCH1Q9NZJ7 389 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 KLHDC2Q9Y2U9 406 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 U3KQV3 271 aa11.23□□□□□ -0.61
CLN3-249ENST00000636685 TRGV10A0A0A0MS01 117 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 NCBP2LA6PVI3 153 aaKnown RBP11.22□□□□□ -0.61
CLN3-249ENST00000636685 MGST3O14880 152 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 CCDC22O60826 627 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 ATP6V1B1P15313 513 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 DUSP1P28562 367 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 IFNGR2P38484 337 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 OR3A1P47881 315 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 SLURP1P55000 103 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 SMIM11AP58511 58 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 RUNX1Q01196 453 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 KLF10Q13118 480 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 KPNB1Q14974 876 aaKnown RBP11.22□□□□□ -0.61
CLN3-249ENST00000636685 CLVS2Q5SYC1 327 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 LCN1P1Q5VSP4 162 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 SLX4IPQ5VYV7 408 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 RNF148Q8N7C7 305 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 ARPC1AQ92747 370 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 SLAMF9Q96A28 289 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 NSL1Q96IY1 281 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 CEP19Q96LK0 163 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 PKIBQ9C010 78 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 KLK15Q9H2R5 256 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 DNAJB9Q9UBS3 223 aa11.22□□□□□ -0.61
CLN3-249ENST00000636685 A0A087X0M5 115 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 A0A0G2JND7 137 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 A0A1B0GX30 115 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 A6NIN4 97 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 FAM183AA6NL82 134 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 NME4O00746 187 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 SELENOFO60613 162 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 IGLV3-1P01715 115 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 IGHV3-7P01780 117 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 ARSBP15848 533 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 VDAC1P21796 283 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 NFYBP25208 207 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 ERP29P30040 261 aaKnown RBP11.21□□□□□ -0.61
CLN3-249ENST00000636685 ISL1P61371 349 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 RPL13AP3Q6NVV1 102 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 ACSM6Q6P461 480 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 TGIF2LXQ8IUE1 241 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 ZNF491Q8N8L2 437 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 Q8N9W7 124 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 OTOSQ8NHW6 89 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 ITFG2Q969R8 447 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 EME1Q96AY2 570 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 UBE2E2Q96LR5 201 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 KCTD7Q96MP8 289 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 TSSK6Q9BXA6 273 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 CADM1Q9BY67 442 aaKnown RBP11.21□□□□□ -0.61
CLN3-249ENST00000636685 PBOV1Q9GZY1 135 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 GHITMQ9H3K2 345 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 LIN7CQ9NUP9 197 aaKnown RBP11.21□□□□□ -0.61
CLN3-249ENST00000636685 FAM206AQ9NX38 181 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 TAS2R3Q9NYW6 316 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 IL20Q9NYY1 176 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 VSIG4Q9Y279 399 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 AP3M1Q9Y2T2 418 aa11.21□□□□□ -0.61
CLN3-249ENST00000636685 SNRPBP14678 240 aaKnown RBP11.2□□□□□ -0.62
CLN3-249ENST00000636685 GLIPR1P48060 266 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 ZNF91Q05481 1191 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 METTL21CQ5VZV1 264 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 TMEM42Q69YG0 159 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 OR4D6Q8NGJ1 314 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 OR9G1Q8NH87 305 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 RP9Q8TA86 221 aaKnown RBP11.2□□□□□ -0.62
CLN3-249ENST00000636685 CORO2AQ92828 525 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 EMG1Q92979 244 aaKnown RBP11.2□□□□□ -0.62
CLN3-249ENST00000636685 LEAP2Q969E1 77 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 OTULINQ96BN8 352 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 RCN3Q96D15 328 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 EAF1Q96JC9 268 aaPredicted RBP11.2□□□□□ -0.62
CLN3-249ENST00000636685 HSPB9Q9BQS6 159 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 ALX4Q9H161 411 aaPredicted RBP11.2□□□□□ -0.62
CLN3-249ENST00000636685 AMMECR1Q9Y4X0 333 aaPredicted RBP11.2□□□□□ -0.62
CLN3-249ENST00000636685 V9GYQ6 96 aa11.2□□□□□ -0.62
CLN3-249ENST00000636685 IGHV3-72A0A0B4J1Y9 119 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 TMEM269A0A1B0GVZ9 245 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 FAM230AA0A1W2PPH8 454 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 DLGAP1O14490 977 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 DHRS3O75911 302 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 T-ENOLP0DO92 83 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 CALCBP10092 127 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 FSTP19883 344 aa11.19□□□□□ -0.62
CLN3-249ENST00000636685 PTGFRP43088 359 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms