RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 OR14A2Q96R54 314 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 EXOSC4Q9NPD3 245 aaKnown RBP13.26□□□□□ -0.29
LSM4-206ENST00000600289 ISYNA1Q9NPH2 558 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 NOX4Q9NPH5 578 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 IL36GQ9NZH8 169 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 CKLFQ9UBR5 152 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 FOXJ3Q9UPW0 622 aa13.26□□□□□ -0.29
LSM4-206ENST00000600289 NBEAL2Q6ZNJ1 2754 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 DNAJC9-AS1A6NH13 148 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 RNASEK-C17orf49H0YIS7 233 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 SH2D1BO14796 132 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 RGS9O75916 674 aaPredicted RBP13.25□□□□□ -0.29
LSM4-206ENST00000600289 INMTO95050 263 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 MAPK3P27361 379 aaPredicted RBP13.25□□□□□ -0.29
LSM4-206ENST00000600289 ERP29P30040 261 aaKnown RBP13.25□□□□□ -0.29
LSM4-206ENST00000600289 ZNF93P35789 620 aaPredicted RBP13.25□□□□□ -0.29
LSM4-206ENST00000600289 UBA52P62987 128 aaKnown RBP13.25□□□□□ -0.29
LSM4-206ENST00000600289 DDI2Q5TDH0 399 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 RUSC1-AS1Q66K80 236 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 TMEM200BQ69YZ2 307 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 HIST2H2BDQ6DRA6 164 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 GDPD3Q7L5L3 318 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 PRSS48Q7RTY5 328 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 C11orf42Q8N5U0 333 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 MS4A15Q8N5U1 240 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 CHST4Q8NCG5 386 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 OR51T1Q8NGJ9 327 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 PPP1R35Q8TAP8 253 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 TNFAIP8L1Q8WVP5 186 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 OR5M11Q96RB7 305 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 GPER1Q99527 375 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 ZNF184Q99676 751 aaPredicted RBP13.25□□□□□ -0.29
LSM4-206ENST00000600289 SIRT7Q9NRC8 400 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 BLOC1S6Q9UL45 172 aa13.25□□□□□ -0.29
LSM4-206ENST00000600289 hCG_1809904A0A1W2PP81 198 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 A0A1W2PPE2 198 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 A0A1W2PR64 198 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 A0A1W2PRV1 198 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 MGST3O14880 152 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 PSPNO60542 156 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 OR2H2O95918 312 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 CSN2P05814 226 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 RNASE1P07998 156 aaKnown RBP13.24□□□□□ -0.29
LSM4-206ENST00000600289 UBE2E1P51965 193 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 DLX6P56179 175 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 BAMBIQ13145 260 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 IL13RA2Q14627 380 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 DEFB112Q30KQ8 113 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 NHLRC3Q5JS37 347 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 Q6P435 159 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 Q6YL49 198 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 LDLRAD3Q86YD5 345 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 TMEM86BQ8N661 226 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.24□□□□□ -0.29
LSM4-206ENST00000600289 SGMS2Q8NHU3 365 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 CNBD2Q96M20 576 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 GSTK1Q9Y2Q3 226 aa13.24□□□□□ -0.29
LSM4-206ENST00000600289 SOX21Q9Y651 276 aaPredicted RBP13.24□□□□□ -0.29
LSM4-206ENST00000600289 KMT2CQ8NEZ4 4911 aaKnown RBP13.23□□□□□ -0.29
LSM4-206ENST00000600289 TRAV8-7A0A075B6U6 113 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 PNMA8CA0A1B0GUJ8 204 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 C17orf98A8MV24 154 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 SC5DO75845 299 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 DUSP1P28562 367 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 PTGFRP43088 359 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 OR3A1P47881 315 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 ZNF273Q14593 569 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 MED22Q15528 200 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 GRK1Q15835 563 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 HCP5Q6MZN7 132 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 UNQ9370/PRO34162Q6UXP9 181 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 SATL1Q86VE3 508 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 LYPD6Q86Y78 171 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 PIP4P2Q8N4L2 257 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 NKAIN3Q8N8D7 197 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 OR4S1Q8NGB4 309 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 OR4M1Q8NGD0 313 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 ORAI1Q96D31 301 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 RRP15Q9Y3B9 282 aaKnown RBP13.23□□□□□ -0.29
LSM4-206ENST00000600289 LINC00312Q9Y6C7 94 aa13.23□□□□□ -0.29
LSM4-206ENST00000600289 MDFIC2A0A1B0GVS7 189 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 hADV38S2A0JD32 116 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 NPFFO15130 113 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 PIN1P1O15428 100 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 DENRO43583 198 aaKnown RBP13.22□□□□□ -0.29
LSM4-206ENST00000600289 MRPS14O60783 128 aaKnown RBP13.22□□□□□ -0.29
LSM4-206ENST00000600289 ZNF780AO75290 641 aaPredicted RBP13.22□□□□□ -0.29
LSM4-206ENST00000600289 CALCBP10092 127 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 GABRR1P24046 479 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 EEF1B2P24534 225 aaKnown RBP13.22□□□□□ -0.29
LSM4-206ENST00000600289 TGFBR2P37173 567 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 OR3A4PP47883 348 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 GABARAPL2P60520 117 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 MLLT11Q13015 90 aaPredicted RBP13.22□□□□□ -0.29
LSM4-206ENST00000600289 TPBGQ13641 420 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 SLC9A3R2Q15599 337 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 TBCEQ15813 527 aaPredicted RBP13.22□□□□□ -0.29
LSM4-206ENST00000600289 TCF23Q7RTU1 214 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 UFD1Q92890 307 aa13.22□□□□□ -0.29
LSM4-206ENST00000600289 FAM192AQ9GZU8 254 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms