RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 OR6K6Q8NGW6 343 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 CNIH3Q8TBE1 160 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 SYNPRQ8TBG9 265 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 FAM45AQ8TCE6 357 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 DCAKDQ8WVC6 231 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 BAALCQ8WXS3 180 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 CCDC126Q96EE4 140 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 SLC35E1Q96K37 410 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 ZNF641Q96N77 438 aaPredicted RBP3.34□□□□□ -1.87
NUP88-213ENST00000576862 OR2V2Q96R30 315 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 CLCC1Q96S66 551 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 COPS4Q9BT78 406 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 TMED9Q9BVK6 235 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 ZNF717Q9BY31 904 aaPredicted RBP3.34□□□□□ -1.87
NUP88-213ENST00000576862 PCBD2Q9H0N5 130 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 NXF5Q9H1B4 397 aaKnown RBP3.34□□□□□ -1.87
NUP88-213ENST00000576862 PPA2Q9H2U2 334 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 ARMC7Q9H6L4 198 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 NANOGQ9H9S0 305 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 UGT1A8Q9HAW9 530 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 BEX1Q9HBH7 125 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 EML4Q9HC35 981 aaKnown RBP3.34□□□□□ -1.87
NUP88-213ENST00000576862 SIGLEC8Q9NYZ4 499 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 ANK1P16157 1881 aa3.34□□□□□ -1.87
NUP88-213ENST00000576862 MGAMO43451 1857 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 A0A0A6YYD5 115 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 A0A0J9YXY3 114 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 A0A1B0GUS0 222 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 FAM159BA6NKW6 160 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 EIF4E2O60573 245 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 GATBO75879 557 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 SUPT7LO94864 414 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 SLC2A1P11166 492 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 SCGB1A1P11684 91 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 PHBP35232 272 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 RBM34P42696 430 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 AP2S1P53680 142 aaPredicted RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 RPS15AP62244 130 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 RPS24P62847 133 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 SLC35B1P78383 322 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 RPL19P84098 196 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 RIPPLY1Q0D2K3 151 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 SLC10A7Q0GE19 358 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 MLLT11Q13015 90 aaPredicted RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 RAB31Q13636 194 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 SF3A2Q15428 464 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 TAF1AQ15573 450 aaPredicted RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 NDUFA9Q16795 377 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 ACSM5Q6NUN0 579 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 FAM131AQ6UXB0 335 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 ZNF836Q6ZNA1 936 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 MBOAT1Q6ZNC8 495 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 FAM92BQ6ZTR7 304 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 DPPA2Q7Z7J5 298 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 LGI3Q8N145 548 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 C4orf33Q8N1A6 199 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 ATP6V0D2Q8N8Y2 350 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 Q8N9L7 120 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 DCAF4L2Q8NA75 395 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 OR11L1Q8NGX0 322 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 LYPD6BQ8NI32 183 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 BLOC1S5Q8TDH9 187 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 RNASEH2CQ8TDP1 164 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 CASTOR1Q8WTX7 329 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 DCUN1D4Q92564 292 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 TMBIM1Q969X1 311 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 CXorf40BQ96DE9 158 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 SDSLQ96GA7 329 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 FAM210BQ96KR6 192 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 BTN2A3PQ96KV6 586 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 VAT1Q99536 393 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 KLF6Q99612 283 aaPredicted RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 ATP5SQ99766 215 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 EBF4Q9BQW3 602 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 SLC35A5Q9BS91 424 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 TLNRD1Q9H1K6 362 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 ABCB9Q9NP78 766 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 NLE1Q9NVX2 485 aaPredicted RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 CLN6Q9NWW5 311 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 THUMPD1Q9NXG2 353 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 GIN1Q9NXP7 522 aa3.33□□□□□ -1.88
NUP88-213ENST00000576862 AK6Q9Y3D8 172 aaKnown RBP3.33□□□□□ -1.88
NUP88-213ENST00000576862 A0A0D9SEW6 157 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 GLYATL1P3A0A0U1RQE8 302 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 A0A1W2PQ67 120 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 GMNCA6NCL1 334 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 F5H5T6 163 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 CCRL2O00421 344 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 FGF16O43320 207 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 SSNA1O43805 119 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 ALOX12BO75342 701 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 SPAG7O75391 227 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 OR2B3O76000 313 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 CD160O95971 181 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 IFNA21P01568 189 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 PPBPP02775 128 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 IFNA16P05015 189 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 CD5P06127 495 aa3.32□□□□□ -1.88
NUP88-213ENST00000576862 C2P06681 752 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms