RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CD8AP01732 235 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 CSF1P09603 554 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 DANCRP0C864 163 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 DYRK1AQ13627 763 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 KLF9Q13886 244 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-209ENST00000573474 C11orf71Q6IPW1 123 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 MZT2BQ6NZ67 158 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 GCSAMQ8N6F7 178 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 BOLLQ8N9W6 283 aaKnown RBP11.52□□□□□ -0.57
CCDC40-209ENST00000573474 VRK1Q99986 396 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-209ENST00000573474 SULT4A1Q9BR01 284 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 OCSTAMPQ9BR26 566 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 SEBOXQ9HB31 216 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-209ENST00000573474 DNAJB11Q9UBS4 358 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 ZNF107Q9UII5 783 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-209ENST00000573474 AK3Q9UIJ7 227 aa11.52□□□□□ -0.57
CCDC40-209ENST00000573474 TRAV24A0A0B4J272 114 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 UBE2QL1A1L167 161 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 MEIS3P1A6NDR6 274 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 CENPXA8MT69 81 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 OR2H2O95918 312 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 HAND1O96004 215 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 SOD3P08294 240 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 ZNF44P15621 663 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 EGR1P18146 543 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 RCVRNP35243 200 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 MRPS15P82914 257 aaKnown RBP11.51□□□□□ -0.57
CCDC40-209ENST00000573474 RBM39Q14498 530 aaKnown RBP11.51□□□□□ -0.57
CCDC40-209ENST00000573474 BRICD5Q6PL45 260 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 C1orf87Q8N0U7 546 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 TMEM229BQ8NBD8 167 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 SUMF2Q8NBJ7 301 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 DEDD2Q8WXF8 326 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 CMSS1Q9BQ75 279 aaKnown RBP11.51□□□□□ -0.57
CCDC40-209ENST00000573474 C7orf50Q9BRJ6 194 aaKnown RBP11.51□□□□□ -0.57
CCDC40-209ENST00000573474 TRAF4Q9BUZ4 470 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-209ENST00000573474 DPCDQ9BVM2 203 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-209ENST00000573474 RAB1BQ9H0U4 201 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 C11orf54Q9H0W9 315 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-209ENST00000573474 UBTD1Q9HAC8 227 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 IFT46Q9NQC8 304 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 NLKQ9UBE8 527 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 OR14J1Q9UGF5 321 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 WIPI2Q9Y4P8 454 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 CACNG2Q9Y698 323 aa11.51□□□□□ -0.57
CCDC40-209ENST00000573474 RFPL4AA6NLU0 287 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 RFPL4AL1F8VTS6 287 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-209ENST00000573474 SIRPB1O00241 398 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 LYRM1O43325 122 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 CLDN1O95832 211 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 PTTG1O95997 202 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 CYB5R3P00387 301 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-209ENST00000573474 COX6B1P14854 86 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 TLE4Q04727 773 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 SP5Q6BEB4 398 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-209ENST00000573474 DCDC5Q6ZRR9 648 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 MINDY2Q8NBR6 621 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 CHPT1Q8WUD6 406 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 CYYR1Q96J86 154 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 CHST6Q9GZX3 395 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 TREM2Q9NZC2 230 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 ANAPC10Q9UM13 185 aa11.5□□□□□ -0.57
CCDC40-209ENST00000573474 IGHV1-69-2A0A0G2JMI3 117 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 NAP1L6A6NFF2 107 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 OR2AT4A6NND4 320 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 SLC33A1O00400 549 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-209ENST00000573474 HPXP02790 462 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 PSG2P11465 335 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 NAT1P18440 290 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 DTYMKP23919 212 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 LMO1P25800 156 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 PRDX2P32119 198 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 CD80P33681 288 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 TAS2R19P59542 299 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 HOXA4Q00056 320 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-209ENST00000573474 OXA1LQ15070 435 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 TRIM16LQ309B1 348 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 PAN3Q58A45 887 aaKnown RBP11.49□□□□□ -0.57
CCDC40-209ENST00000573474 GDPD3Q7L5L3 318 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 HOGA1Q86XE5 327 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 GVQW1Q8N7I0 195 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 NEK7Q8TDX7 302 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 NEU4Q8WWR8 484 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-209ENST00000573474 RDH5Q92781 318 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 CACNG6Q9BXT2 260 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 RIMS4Q9H426 269 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-209ENST00000573474 HRASLSQ9HDD0 168 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 TMEM106BQ9NUM4 274 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 ETAA1Q9NY74 926 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 LAMP3Q9UQV4 416 aa11.49□□□□□ -0.57
CCDC40-209ENST00000573474 ABCA4P78363 2273 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 ZNF736B4DX44 427 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-209ENST00000573474 TMEM178BH3BS89 294 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 LGALS8O00214 317 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 AKAIN1P0CW23 69 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 MUC1P15941 1255 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-209ENST00000573474 FAUP35544 74 aaKnown RBP11.48□□□□□ -0.57
CCDC40-209ENST00000573474 RBMXP38159 391 aaKnown RBP11.48□□□□□ -0.57
CCDC40-209ENST00000573474 MDH2P40926 338 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms