RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 KDELR2P33947 212 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 PCK1P35558 622 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 UGT2B10P36537 528 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TGM4P49221 684 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ACOT2P49753 483 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 XKP51811 444 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 DSTNP60981 165 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 UBE2KP61086 200 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 SLC35B1P78383 322 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 DR1Q01658 176 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 C2orf80Q0P641 193 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 STX5Q13190 355 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 OR4D1Q15615 310 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ZBTB6Q15916 424 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ATP6V1FQ16864 119 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 EXOC3L4Q17RC7 722 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 C5orf64Q2M2E5 130 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 GOLGA7BQ2TAP0 167 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TMEM31Q5JXX7 168 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ZNF660Q6AZW8 331 aaPredicted RBP0.9□□□□□ -2.27
VPS35-207ENST00000568191 FAHD1Q6P587 224 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 CLEC18BQ6UXF7 455 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 FAM151BQ6UXP7 276 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 Q6ZSR6 202 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 UNC93AQ86WB7 457 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TMEM25Q86YD3 366 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 FUNDC1Q8IVP5 155 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 SLC25A29Q8N8R3 303 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ZNF738Q8NE65 137 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 OR2Y1Q8NGV0 311 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 OR6K6Q8NGW6 343 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 OR6K2Q8NGY2 324 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 OR51F2Q8NH61 342 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ITFG1Q8TB96 612 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 OR8D1Q8WZ84 308 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 RBPMSQ93062 196 aaKnown RBP0.9□□□□□ -2.27
VPS35-207ENST00000568191 PPP1R14BQ96C90 147 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 BTN2A3PQ96KV6 586 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ZNF75AQ96N20 296 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 CIB1Q99828 191 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 C9orf16Q9BUW7 83 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ZNF426Q9BUY5 554 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 BEX2Q9BXY8 128 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 API5Q9BZZ5 524 aaKnown RBP0.9□□□□□ -2.27
VPS35-207ENST00000568191 DERL2Q9GZP9 239 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ARMC7Q9H6L4 198 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 VSIRQ9H7M9 311 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 METTL8Q9H825 291 aaKnown RBP0.9□□□□□ -2.27
VPS35-207ENST00000568191 PLEKHA1Q9HB21 404 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 MRM3Q9HC36 420 aaKnown RBP0.9□□□□□ -2.27
VPS35-207ENST00000568191 FBXO8Q9NRD0 319 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TMEM106BQ9NUM4 274 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TMEM100Q9NV29 134 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 RMND1Q9NWS8 449 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 CLN6Q9NWW5 311 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 MAT2BQ9NZL9 334 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 PRELID1Q9Y255 219 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 HES2Q9Y543 173 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 FADS3Q9Y5Q0 445 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TMEM131Q92545 1883 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 USP42Q9H9J4 1324 aaKnown RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 PRRC2BQ5JSZ5 2229 aaKnown RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 ADAMTSL3P82987 1691 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 TRAV8-7A0A075B6U6 113 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ANKRD20A5PA0PJZ0 165 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 GOLGA6L10A6NI86 522 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 H7C0C1 242 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 SULT1C2O00338 296 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 PLPP3O14495 311 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 SYNGR2O43760 224 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ZNF189O75820 626 aaPredicted RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 PSMG1O95456 288 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 NSA2O95478 260 aaKnown RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 CATP04040 527 aaKnown RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 RHOCP08134 193 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 KRT7P08729 469 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 RPSAP08865 295 aaKnown RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 MMP7P09237 267 aaPredicted RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 TACSTD2P09758 323 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 CTXN2P0C2S0 81 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 PET100P0DJ07 73 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 COX5BP10606 129 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 PSKH1P11801 424 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 HLA-GP17693 338 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 IL3RAP26951 378 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 MPIP34949 423 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ARR3P36575 388 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ACTR1BP42025 376 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 CDKN2CP42773 168 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 MAGEA2P43356 314 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 MAGEA3P43357 314 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 RANBP1P43487 201 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 DNASE1L1P49184 302 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 RGS6P49758 472 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 CLDN6P56747 220 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 KLF3P57682 345 aaPredicted RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 TAS2R60P59551 318 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 OR2B8PP59922 312 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ACTBP60709 375 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 MAGOHP61326 146 aaKnown RBP0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms