RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 MFSD9Q8NBP5 474 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 GMCL1P1Q8NEA9 526 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR52B4Q8NGK2 314 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR9A4Q8NGU2 314 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR10K1Q8NGX5 313 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR5J2Q8NH18 312 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 HAVCR2Q8TDQ0 301 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 DTD1Q8TEA8 209 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CHCHD10Q8WYQ3 142 aaPredicted RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 HIST1H2BAQ96A08 127 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TM4SF18Q96CE8 201 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ITCHQ96J02 903 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR4K3Q96R72 315 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF382Q96SR6 550 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 S100A13Q99584 98 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 GINS4Q9BRT9 223 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 NDUFAF3Q9BU61 184 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 POLR2J2Q9GZM3 115 aaKnown RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CHST5Q9GZS9 411 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 HDHD2Q9H0R4 259 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR52A5Q9H2C5 316 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 GAL3ST2Q9H3Q3 398 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CLMPQ9H6B4 373 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 WDR76Q9H967 626 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 FGF20Q9NP95 211 aaPredicted RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 EXOSC4Q9NPD3 245 aaKnown RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ASCL3Q9NQ33 180 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 YAE1D1Q9NRH1 226 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 GLRX2Q9NS18 164 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TREX1Q9NSU2 369 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM100Q9NV29 134 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TAS2R5Q9NYW4 299 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 SLC25A37Q9NYZ2 338 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CALML5Q9NZT1 146 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 VAPAQ9P0L0 249 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 COMMD3Q9UBI1 195 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 PISDQ9UG56 409 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 IL20RAQ9UHF4 553 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 EXOSC1Q9Y3B2 195 aaKnown RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 FIS1Q9Y3D6 152 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TIMM10BQ9Y5J6 103 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 V9GYQ6 96 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 DSPPQ9NZW4 1301 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 PHLPP1O60346 1717 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 AHDC1Q5TGY3 1603 aaPredicted RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 BAZ2BQ9UIF8 2168 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 A0A087WUJ7 227 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 IGHV3-64DA0A0J9YX35 117 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 GSAPA4D1B5 854 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 A8MWP6 167 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SEC14L6B5MCN3 397 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 GPR89AB7ZAQ6 455 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 LRRN3E7EW58 273 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 H3BTX0 84 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 HAS3O00219 553 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TNFRSF11BO00300 401 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 DLEU1O43261 78 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TGOLN2O43493 480 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 CHST10O43529 356 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 LANCL1O43813 399 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OR2T1O43869 369 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 CREBL2O60519 120 aaPredicted RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ENTPD6O75354 484 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 REM1O75628 298 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 UBL3O95164 117 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 NDUFA7O95182 113 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 RAB36O95755 333 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 C6orf47O95873 294 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 CD8AP01732 235 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OPN1MWP04001 364 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ADRA2AP08913 450 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 GPR89BP0CG08 455 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OPN1MW2P0DN77 364 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 OPN1MW3P0DN78 364 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 GPX2P18283 190 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ADCYAP1P18509 176 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 RAB5AP20339 215 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TBXA2RP21731 343 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 PPIBP23284 216 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 CD1CP29017 333 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 PTPN6P29350 595 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 PRDX2P32119 198 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ADRA1AP35348 466 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SLC1A2P43004 574 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 GLP1RP43220 463 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 KIR2DS2P43631 304 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 CDKN1BP46527 198 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 TFPI2P48307 235 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 SRP9P49458 86 aaKnown RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 GNG10P50151 68 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 PRKXP51817 358 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF140P52738 457 aaPredicted RBP2.13□□□□□ -2.07
VPS13C-208ENST00000559119 CRISP1P54107 249 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 FOXA1P55317 472 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 CTBP2P56545 445 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 DAOAP59103 153 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 RAP1BP61224 184 aa2.13□□□□□ -2.07
VPS13C-208ENST00000559119 MRPS10P82664 201 aaKnown RBP2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms