RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SRRQ9GZT4 340 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 SLC25A31Q9H0C2 315 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ING2Q9H160 280 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 PARP11Q9NR21 331 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 SDHAF3Q9NRP4 125 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 RBM22Q9NW64 420 aaKnown RBP eCLIP0.91□□□□□ -2.26
USP3-209ENST00000558925 DNAJC27Q9NZQ0 273 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 BTRCQ9Y297 605 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 GMEB1Q9Y692 573 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 TMEM94Q12767 1356 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 PIK3R4Q99570 1358 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ABCB11O95342 1321 aa0.9□□□□□ -2.26
USP3-209ENST00000558925 NPHP4O75161 1426 aaPredicted RBP0.9□□□□□ -2.26
USP3-209ENST00000558925 SDK2Q58EX2 2172 aa0.9□□□□□ -2.26
USP3-209ENST00000558925 SIGLEC1Q9BZZ2 1709 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 IGHV3OR16-8A0A075B7F1 116 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TRAV40A0A0B4J280 105 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 MYBPHLA2RUH7 354 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 IZUMO1RA6ND01 250 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 ZNF98A6NK75 572 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 A8MWL6 223 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 C8orf87E5RJ46 101 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 PRAMEF26H0Y7S4 382 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 J3QLI3 93 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 MFNGO00587 321 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TCAPO15273 167 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 FADS2O95864 444 aaKnown RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 ASS1P00966 412 aaKnown RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 TRGV3P03979 118 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SOD3P08294 240 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SPNP16150 400 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 CELP19835 753 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 S100A2P29034 98 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 IMPA1P29218 277 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SLC6A1P30531 599 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 GTF2H1P32780 548 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 KDELR2P33947 212 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TGFBR2P37173 567 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SPAM1P38567 509 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TGM4P49221 684 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TTPAP49638 278 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 CCL23P55773 120 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 RAB25P57735 213 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 DSTNP60981 165 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TSPAN5P62079 268 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SKP1P63208 163 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 HBG1P69891 147 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 HBG2P69892 147 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 FMODQ06828 376 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 BAXQ07812 192 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SLAMF1Q13291 335 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 FLOT2Q14254 428 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 OR4D1Q15615 310 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 USF2Q15853 346 aaPredicted RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 PDPK2PQ6A1A2 396 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 ELP2Q6IA86 826 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 LAIR2Q6ISS4 152 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 IGFL3Q6UXB1 125 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 C16orf47Q6ZP98 133 aaPredicted RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 TMEM136Q6ZRR5 245 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 USP50Q70EL3 339 aaPredicted RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 TRMT10CQ7L0Y3 403 aaKnown RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 FA2HQ7L5A8 372 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 BHLHA15Q7RTS1 189 aaPredicted RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 NEGR1Q7Z3B1 354 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 FAM19A3Q7Z5A8 133 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TMEM144Q7Z5S9 345 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 LRRC6Q86X45 466 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 C10orf107Q8IVU9 208 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 C17orf78Q8N4C9 275 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 ZNF561Q8N587 486 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 OR5H2Q8NGV7 314 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 OR6K3Q8NGY3 331 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 OR8S1Q8NH09 359 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 ANGPTL6Q8NI99 470 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 PDCD6IPQ8WUM4 868 aaKnown RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 TWIST2Q8WVJ9 160 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 NELFBQ8WX92 580 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 IFT81Q8WYA0 676 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 MAL2Q969L2 176 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 MRAP2Q96G30 205 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 PPP1R36Q96LQ0 422 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 TMEM56Q96MV1 263 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 LLPHQ9BRT6 129 aaKnown RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 ANAPC13Q9BS18 74 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 MED10Q9BTT4 135 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SUCNR1Q9BXA5 334 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 ULBP1Q9BZM6 244 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 SLC19A3Q9BZV2 496 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 NDEL1Q9GZM8 345 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 OR52A5Q9H2C5 316 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 WDR55Q9H6Y2 383 aaPredicted RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 VSIRQ9H7M9 311 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 FAM60AQ9NP50 221 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 EURLQ9NYK6 297 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 STX18Q9P2W9 335 aaKnown RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 MARCOQ9UEW3 520 aaPredicted RBP0.9□□□□□ -2.27
USP3-209ENST00000558925 CD300AQ9UGN4 299 aa0.9□□□□□ -2.27
USP3-209ENST00000558925 ZNF230Q9UIE0 474 aaPredicted RBP0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms