RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SPACA1Q9HBV2 294 aa22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 DECR2Q9NUI1 292 aa22.47■■□□□ 1.19
CCDC88C-205ENST00000553403 IGHV1-18A0A0C4DH31 117 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 PLSCR5A0PG75 271 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 OR5H8P0DN80 308 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 PRKACAP17612 351 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 VAMP1P23763 118 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 ZNF660Q6AZW8 331 aaPredicted RBP22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 DHRS11Q6UWP2 260 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 Q6ZS49 121 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 ADAT1Q9BUB4 502 aaKnown RBP22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 A0A0B4J2A0 478 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 SFT2D2O95562 160 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 CALCRP30988 508 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 MPV17P39210 176 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 TIMM23BQ5SRD1 257 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 FAM58AQ8N1B3 248 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 Q8NA96 180 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 ZNF2Q9BSG1 426 aaPredicted RBP22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 SHPKQ9UHJ6 478 aa22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 PURGQ9UJV8 347 aaKnown RBP22.46■■□□□ 1.19
CCDC88C-205ENST00000553403 IGHV2OR16-5A0A0B4J2B6 119 aa22.45■■□□□ 1.18
CCDC88C-205ENST00000553403 TMEM210A6NLX4 147 aa22.45■■□□□ 1.18
CCDC88C-205ENST00000553403 GLAP06280 429 aa22.45■■□□□ 1.18
CCDC88C-205ENST00000553403 ALKBH6Q3KRA9 238 aa22.45■■□□□ 1.18
CCDC88C-205ENST00000553403 C3orf36Q3SXR2 165 aa22.45■■□□□ 1.18
CCDC88C-205ENST00000553403 C1QTNF12Q5T7M4 302 aa22.45■■□□□ 1.18
CCDC88C-205ENST00000553403 Q8IYB0 196 aa22.45■■□□□ 1.18
CCDC88C-205ENST00000553403 POLDIP2Q9Y2S7 368 aa22.45■■□□□ 1.18
CCDC88C-205ENST00000553403 LAMA5O15230 3695 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 FAM221AA4D161 298 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 HMSDA8MTL9 139 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 GLI4P10075 376 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 PGAM2P15259 253 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 C4BPBP20851 252 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 KITLGP21583 273 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 IKZF1Q13422 519 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 OR8G1Q15617 311 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 SLC22A25Q6T423 547 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 ZNF767PQ75MW2 155 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 WDR86Q86TI4 376 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 OR8G5Q8NG78 346 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 CASTOR1Q8WTX7 329 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 GTF3AQ92664 365 aaKnown RBP22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 IFT22Q9H7X7 185 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 TMEM100Q9NV29 134 aa22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 C14orf166Q9Y224 244 aaKnown RBP22.44■■□□□ 1.18
CCDC88C-205ENST00000553403 DBX1A6NMT0 343 aa22.43■■□□□ 1.18
CCDC88C-205ENST00000553403 MCRIP1C9JLW8 97 aa22.43■■□□□ 1.18
CCDC88C-205ENST00000553403 PRRG2O14669 202 aa22.43■■□□□ 1.18
CCDC88C-205ENST00000553403 CD8AP01732 235 aa22.43■■□□□ 1.18
CCDC88C-205ENST00000553403 GMFBP60983 142 aa22.43■■□□□ 1.18
CCDC88C-205ENST00000553403 CISD2Q8N5K1 135 aaKnown RBP22.43■■□□□ 1.18
CCDC88C-205ENST00000553403 CLEC4MQ9H2X3 399 aaPredicted RBP22.43■■□□□ 1.18
CCDC88C-205ENST00000553403 IL36RNQ9UBH0 155 aa22.43■■□□□ 1.18
CCDC88C-205ENST00000553403 CTSDP07339 412 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 ZNF81P51508 661 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 ZNF718Q3SXZ3 478 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 MBNL2Q5VZF2 373 aaKnown RBP22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 SCCPDHQ8NBX0 429 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 ZNF488Q96MN9 340 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 CHMP1AQ9HD42 196 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 CELSR3Q9NYQ7 3312 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 RHBDL1O75783 438 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 NAPSAO96009 420 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 GLRA1P23415 457 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 NFYAP23511 347 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 TMPRSS3P57727 454 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 BAMBIQ13145 260 aa22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 RIMS4Q9H426 269 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-205ENST00000553403 INTS1Q8N201 2190 aaKnown RBP22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 ACAA1P09110 424 aaPredicted RBP22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 UCNP55089 124 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 ERVK11-1P61568 191 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 FGL1Q08830 312 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 CLEC18BQ6UXF7 455 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 C3P1Q6ZMU1 363 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 Q6ZPA2 131 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 PIGMQ9H3S5 423 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 SLC23A1Q9UHI7 598 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 NBEAQ8NFP9 2946 aa22.41■■□□□ 1.18
CCDC88C-205ENST00000553403 RFPL4AA6NLU0 287 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 RFPL4AL1F8VTS6 287 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 TSC22D2O75157 780 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 PI3P19957 117 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 SEC61A1P61619 476 aaKnown RBP22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 SUPT4H1P63272 117 aaKnown RBP22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 NAAAQ02083 359 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 DOLPP1Q86YN1 238 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 COQ8AQ8NI60 647 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 S100PBPQ96BU1 408 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 HEXA-AS1Q9H8Q6 139 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 Q9N2K0 584 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 ITPR1Q14643 2758 aa22.4■■□□□ 1.18
CCDC88C-205ENST00000553403 RPS2P15880 293 aaKnown RBP22.39■■□□□ 1.18
CCDC88C-205ENST00000553403 GCH1P30793 250 aa22.39■■□□□ 1.18
CCDC88C-205ENST00000553403 GLP1RP43220 463 aa22.39■■□□□ 1.18
CCDC88C-205ENST00000553403 ZNF154Q13106 437 aa22.39■■□□□ 1.18
CCDC88C-205ENST00000553403 KCTD9Q7L273 389 aa22.39■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms