RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 MLF1P58340 268 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 KLF9Q13886 244 aaPredicted RBP10.18□□□□□ -0.78
SYNE2-208ENST00000553289 CLEC12BQ2HXU8 276 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 TRMT61AQ96FX7 289 aaKnown RBP10.18□□□□□ -0.78
SYNE2-208ENST00000553289 GPR27Q9NS67 375 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 COL24A1Q17RW2 1714 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 DUXBA0A1W2PPF3 345 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 SNCGO76070 127 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 NGFRP08138 427 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 HIST1H3AP68431 136 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 TBC1D26Q86UD7 250 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 VASH2Q86V25 355 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 ZDHHC16Q969W1 377 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 CFHR5Q9BXR6 569 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 B4DEV8 164 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 CDS2O95674 445 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 IFI6P09912 130 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 ACSM6Q6P461 480 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 RFESDQ8TAC1 157 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 ASB5Q8WWX0 329 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 GRAMD2BQ96HH9 432 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 FAM210BQ96KR6 192 aa10.18□□□□□ -0.78
SYNE2-208ENST00000553289 PCDHGA9Q9Y5G4 932 aaKnown RBP10.18□□□□□ -0.78
SYNE2-208ENST00000553289 RBFOX3A6NFN3 312 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 PHOX2AO14813 284 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 TOX4O94842 621 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 GZMHP20718 246 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 BMP5P22003 454 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 SELENOPP49908 381 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 SPCS3P61009 180 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 RPEL1Q2QD12 228 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 C16orf47Q6ZP98 133 aaPredicted RBP10.17□□□□□ -0.78
SYNE2-208ENST00000553289 MISP3Q96FF7 219 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 NAT8Q9UHE5 227 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 NAT8BQ9UHF3 227 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 J3QT63 122 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 LYZL6O75951 148 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 SP1P08047 785 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 PNLIPP16233 465 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 RPS4Y1P22090 263 aaKnown RBP10.17□□□□□ -0.78
SYNE2-208ENST00000553289 IFT22Q9H7X7 185 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 OPN4Q9UHM6 478 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 LOC102723971A0A1B0GUV8 181 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 DEFB108AA8MXU0 73 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 GATCO43716 136 aaKnown RBP10.17□□□□□ -0.78
SYNE2-208ENST00000553289 ASCL1P50553 236 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 PTTG1IPP53801 180 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 ZP4Q12836 540 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 GAB4Q2WGN9 574 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 MRGPRDQ8TDS7 321 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 OR2H1Q9GZK4 316 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 Q9N2K0 584 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 FOXC1Q12948 553 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 TRIP6Q15654 476 aaKnown RBP10.17□□□□□ -0.78
SYNE2-208ENST00000553289 SSX8Q7RTT4 187 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 ANAPC16Q96DE5 110 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 CHST5Q9GZS9 411 aa10.17□□□□□ -0.78
SYNE2-208ENST00000553289 ALX4Q9H161 411 aaPredicted RBP10.17□□□□□ -0.78
SYNE2-208ENST00000553289 DUSP15Q9H1R2 295 aaPredicted RBP10.17□□□□□ -0.78
SYNE2-208ENST00000553289 TMEM210A6NLX4 147 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 BTNL3Q6UXE8 466 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 BHLHA15Q7RTS1 189 aaPredicted RBP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 OR2M3Q8NG83 312 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 OR5A2Q8NGI9 324 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 SP7Q8TDD2 431 aaPredicted RBP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 SOCS1O15524 211 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 HNRNPA3P51991 378 aaKnown RBP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 SPEM2Q0P670 501 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 VAMP3Q15836 100 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 HES3Q5TGS1 186 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 FNDC7Q5VTL7 733 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 C1QL3Q5VWW1 255 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 UBALD1Q8TB05 177 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 RAB1CQ92928 201 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 RAB1BQ9H0U4 201 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 TECRQ9NZ01 308 aaKnown RBP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 ZMIZ1Q9ULJ6 1067 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 SH2D7A6NKC9 451 aaPredicted RBP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 PTP4A3O75365 173 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 ADAP1O75689 374 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 PPYP01298 95 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 POLR2GP62487 172 aaKnown RBP eCLIP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 MRPS11P82912 194 aaKnown RBP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 C1orf174Q8IYL3 243 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 SLC26A10Q8NG04 563 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 R3HDM4Q96D70 268 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 NUDT16L1Q9BRJ7 211 aaKnown RBP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 TMEM265A0A087WTH1 108 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 ELOA3CA0A087WX78 387 aaPredicted RBP10.16□□□□□ -0.78
SYNE2-208ENST00000553289 FABP4P15090 132 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 ZNF345Q14585 488 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 C9orf62Q8N4C0 152 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 TMEM37Q8WXS4 190 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 SEC11CQ9BY50 192 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 GPR35Q9HC97 309 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 TMEM38BQ9NVV0 291 aa10.16□□□□□ -0.78
SYNE2-208ENST00000553289 A0A1W2PR80 420 aa10.15□□□□□ -0.78
SYNE2-208ENST00000553289 DYNLT3P51808 116 aa10.15□□□□□ -0.78
SYNE2-208ENST00000553289 FAM74A3Q4VXF1 159 aa10.15□□□□□ -0.78
SYNE2-208ENST00000553289 TMEM91Q6ZNR0 172 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms