RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 RFPL4AL1F8VTS6 287 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 SULT1C2O00338 296 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 SIGLEC5O15389 551 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 SOCS1O15524 211 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 PDCD6O75340 191 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 OR2H2O95918 312 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 PLATP00750 562 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 GSTP1P09211 210 aaKnown RBP8□□□□□ -1.13
LIMA1-211ENST00000552338 DNASE1P24855 282 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 CDK2P24941 298 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 ERP29P30040 261 aaKnown RBP8□□□□□ -1.13
LIMA1-211ENST00000552338 PRDX2P32119 198 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 MDH2P40926 338 aaKnown RBP8□□□□□ -1.13
LIMA1-211ENST00000552338 PITPNBP48739 271 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 PDLIM4P50479 330 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 MRPS10P82664 201 aaKnown RBP8□□□□□ -1.13
LIMA1-211ENST00000552338 TAF9Q16594 264 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 SRSF7Q16629 238 aaKnown RBP eCLIP8□□□□□ -1.13
LIMA1-211ENST00000552338 PNLIPRP3Q17RR3 467 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 CR1LQ2VPA4 569 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 PIGYQ3MUY2 71 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 PLAC9Q5JTB6 97 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 HIST2H2BCQ6DN03 193 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 PYHIN1Q6K0P9 492 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 DCDC5Q6ZRR9 648 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 Q6ZTK2 550 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 PEG10Q86TG7 708 aaKnown RBP8□□□□□ -1.13
LIMA1-211ENST00000552338 CD177Q8N6Q3 437 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 S100ZQ8WXG8 99 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 RAB1CQ92928 201 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 MED30Q96HR3 178 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 LURAP1Q96LR2 239 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 NICN1Q9BSH3 213 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 SHARPINQ9H0F6 387 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 ZNF665Q9H7R5 613 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 ELL3Q9HB65 397 aaPredicted RBP8□□□□□ -1.13
LIMA1-211ENST00000552338 AKIP1Q9NQ31 210 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 KCNK7Q9Y2U2 307 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 MAB21L2Q9Y586 359 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 V9GYH0 126 aa8□□□□□ -1.13
LIMA1-211ENST00000552338 GCN1Q92616 2671 aaKnown RBP7.99□□□□□ -1.13
LIMA1-211ENST00000552338 K7N7A8 449 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 SLC33A1O00400 549 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-211ENST00000552338 RGS5O15539 181 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 HAND1O96004 215 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 HIST1H1DP16402 221 aaKnown RBP7.99□□□□□ -1.13
LIMA1-211ENST00000552338 BLVRBP30043 206 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-211ENST00000552338 VEGFCP49767 419 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 ATP5J2P56134 94 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 PITPNAQ00169 270 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 RBM39Q14498 530 aaKnown RBP7.99□□□□□ -1.13
LIMA1-211ENST00000552338 ZMYND11Q15326 602 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 MOGAT2Q3SYC2 334 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 FAM201AQ5SY85 155 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 CNIH2Q6PI25 160 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 C17orf107Q6ZR85 190 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 Q6ZS49 121 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 OR4M1Q8NGD0 313 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 OR5D13Q8NGL4 314 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 C10orf105Q8TEF2 133 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 NRGNQ92686 78 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 RAB3CQ96E17 227 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 SEH1LQ96EE3 360 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 TIMD4Q96H15 378 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 DIRAS2Q96HU8 199 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 GAFA1Q96PS6 74 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 TMEM246Q9BRR3 403 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 PECRQ9BY49 303 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 ATG5Q9H1Y0 275 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 IL36RNQ9UBH0 155 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 EXTL2Q9UBQ6 330 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 DNAJB11Q9UBS4 358 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 MIOXQ9UGB7 285 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 ANAPC10Q9UM13 185 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 POLR3KQ9Y2Y1 108 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-211ENST00000552338 FBN2P35556 2912 aa7.99□□□□□ -1.13
LIMA1-211ENST00000552338 LYNX1G3V0Z9 82 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 DEGS1O15121 323 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 GSTZ1O43708 216 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-211ENST00000552338 PSPNO60542 156 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 OR7C1O76099 320 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-211ENST00000552338 LY6HO94772 140 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 NAPSAO96009 420 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 WNT2P09544 360 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 LYNX1P0DP58 116 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 CD40LGP29965 261 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 CD80P33681 288 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 TALDO1P37837 337 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 GPR6P46095 362 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-211ENST00000552338 NPY4RP50391 375 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 TAS2R20P59543 309 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 SSBP1Q04837 148 aaKnown RBP7.98□□□□□ -1.13
LIMA1-211ENST00000552338 ZNF79Q15937 498 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 KIAA2026Q5HYC2 2103 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 HACD4Q5VWC8 232 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 ZNF880Q6PDB4 577 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 ZNF841Q6ZN19 808 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 SLC36A1Q7Z2H8 476 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 ZNF554Q86TJ5 538 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 OR8H2Q8N162 312 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms