RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RPS4Y2Q8TD47 263 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 SNX22Q96L94 193 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 CEP19Q96LK0 163 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 OR5M11Q96RB7 305 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 CITED2Q99967 270 aaPredicted RBP6.81□□□□□ -1.32
USP28-215ENST00000545608 CDCA4Q9BXL8 241 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 PRRG3Q9BZD7 231 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 MMP28Q9H239 520 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 ABCB10Q9NRK6 738 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 AP5S1Q9NUS5 200 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 IL36RNQ9UBH0 155 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.81□□□□□ -1.32
USP28-215ENST00000545608 NOTCH3Q9UM47 2321 aa6.81□□□□□ -1.32
USP28-215ENST00000545608 METTL15A6NJ78 407 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 G3V2T6 193 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 PSPNO60542 156 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 MMP23AO75900 390 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 IGHA1P01876 353 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 RBP4P02753 201 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 OR2T7P0C7T2 308 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 CALCBP10092 127 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 DUSP1P28562 367 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 KIR3DL2P43630 455 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 NPBWR2P48146 333 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 HSPA13P48723 471 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 DYNLT3P51808 116 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 FUT6P51993 359 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 ACTA2P62736 377 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 ACTG2P63267 376 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 ACTC1P68032 377 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 ACTA1P68133 377 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 EMX1Q04741 257 aaPredicted RBP6.8□□□□□ -1.32
USP28-215ENST00000545608 MEF2CQ06413 473 aaPredicted RBP6.8□□□□□ -1.32
USP28-215ENST00000545608 EDDM3AQ14507 147 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 ATP6AP1Q15904 470 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 SLC25A26Q70HW3 274 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 AMIGO2Q86SJ2 522 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 GID4Q8IVV7 300 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 RDH10Q8IZV5 341 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 PRSS35Q8N3Z0 413 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 OR4S1Q8NGB4 309 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 EMG1Q92979 244 aaKnown RBP6.8□□□□□ -1.32
USP28-215ENST00000545608 FOXRED1Q96CU9 486 aaPredicted RBP6.8□□□□□ -1.32
USP28-215ENST00000545608 R3HDM4Q96D70 268 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 BORCS8Q96FH0 119 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 ZNF714Q96N38 554 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 PRSS22Q9GZN4 317 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 CHST5Q9GZS9 411 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 PLEKHA1Q9HB21 404 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 WARS2Q9UGM6 360 aaKnown RBP6.8□□□□□ -1.32
USP28-215ENST00000545608 PITPNC1Q9UKF7 332 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 HILPDAQ9Y5L2 63 aa6.8□□□□□ -1.32
USP28-215ENST00000545608 PLXNB1O43157 2135 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 IGHV2-26A0A0B4J1V2 119 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 IGKV1-9A0A0C4DH69 117 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 hADV38S2A0JD32 116 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 GATBO75879 557 aaKnown RBP6.79□□□□□ -1.32
USP28-215ENST00000545608 SULT1C4O75897 302 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 HAND1O96004 215 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 SERPINA3P01011 423 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 IGLV1-40P01703 118 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 BCL3P20749 454 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 PEX2P28328 305 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 HTR1FP30939 366 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 RPL5P46777 297 aaKnown RBP6.79□□□□□ -1.32
USP28-215ENST00000545608 OR12D2P58182 307 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 RPL11P62913 178 aaKnown RBP6.79□□□□□ -1.32
USP28-215ENST00000545608 ZNF85Q03923 595 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 ZNF91Q05481 1191 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 DCTN2Q13561 401 aaKnown RBP6.79□□□□□ -1.32
USP28-215ENST00000545608 GRK1Q15835 563 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 TMEM95Q3KNT9 176 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 TP53I3Q53FA7 332 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 MINOS1Q5TGZ0 78 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 IZUMO2Q6UXV1 221 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 BAIAP2L2Q6UXY1 529 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 ZNF554Q86TJ5 538 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 NDUFA11Q86Y39 141 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 ZDHHC13Q8IUH4 622 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 ZNF676Q8N7Q3 588 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 OR10H4Q8NGA5 316 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 NDNFQ8TB73 568 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 EME1Q96AY2 570 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 ADAT3Q96EY9 351 aaPredicted RBP6.79□□□□□ -1.32
USP28-215ENST00000545608 CIB1Q99828 191 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 ADI1Q9BV57 179 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 CHST6Q9GZX3 395 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 GABARAPL1Q9H0R8 117 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 SEBOXQ9HB31 216 aaPredicted RBP6.79□□□□□ -1.32
USP28-215ENST00000545608 RBFOX1Q9NWB1 397 aaKnown RBP6.79□□□□□ -1.32
USP28-215ENST00000545608 LINC00312Q9Y6C7 94 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 SESN1Q9Y6P5 492 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 MINOS1-NBL1R4GNA1 71 aa6.79□□□□□ -1.32
USP28-215ENST00000545608 LOC107986453A0A1B0GWG9 222 aa6.78□□□□□ -1.32
USP28-215ENST00000545608 FAM90A22PA8MWA6 464 aa6.78□□□□□ -1.32
USP28-215ENST00000545608 F2RL2O00254 374 aa6.78□□□□□ -1.32
USP28-215ENST00000545608 XPNPEP2O43895 674 aa6.78□□□□□ -1.32
USP28-215ENST00000545608 ENTPD6O75354 484 aa6.78□□□□□ -1.32
USP28-215ENST00000545608 BAG2O95816 211 aa6.78□□□□□ -1.32
USP28-215ENST00000545608 HNRNPCP07910 306 aaKnown RBP eCLIP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms