RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 RBM11P57052 281 aaKnown RBP11.89□□□□□ -0.51
VPS33A-208ENST00000543633 SOHLH1Q5JUK2 328 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 RBMS3Q6XE24 437 aaKnown RBP11.89□□□□□ -0.51
VPS33A-208ENST00000543633 PPP1R3BQ86XI6 285 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 CLEC18CQ8NCF0 446 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 CPT1CQ8TCG5 803 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 TMEM56Q96MV1 263 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 DUSP23Q9BVJ7 150 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 TMEM222Q9H0R3 208 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 SH3BGRL3Q9H299 93 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 TMPRSS5Q9H3S3 457 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 DKKL1Q9UK85 242 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 SLC7A11Q9UPY5 501 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 TMEM56-RWDD3S4R434 201 aa11.89□□□□□ -0.51
VPS33A-208ENST00000543633 PIGBOS1A0A0B4J2F0 54 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 A0A1W2PPE3 182 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 HSPA12AO43301 675 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 PDGFBP01127 241 aaPredicted RBP11.88□□□□□ -0.51
VPS33A-208ENST00000543633 ZXDAP98168 799 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 BAXQ07812 192 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 RAET1LQ5VY80 246 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 DPPA3Q6W0C5 159 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 TMEM182Q6ZP80 229 aaPredicted RBP11.88□□□□□ -0.51
VPS33A-208ENST00000543633 SLC16A13Q7RTY0 426 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 ABCA7Q8IZY2 2146 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 FBXL14Q8N1E6 418 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 SLC35G3Q8N808 338 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF565Q8N9K5 539 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 HSD17B11Q8NBQ5 300 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 Q8NFD4 153 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 FAM213BQ8TBF2 198 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 ISOC2Q96AB3 205 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 GNPNAT1Q96EK6 184 aaPredicted RBP11.88□□□□□ -0.51
VPS33A-208ENST00000543633 PARP12Q9H0J9 701 aaKnown RBP11.88□□□□□ -0.51
VPS33A-208ENST00000543633 PLEKHF2Q9H8W4 249 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 SH2D2AQ9NP31 389 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 TMEM38BQ9NVV0 291 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 FBXO7Q9Y3I1 522 aa11.88□□□□□ -0.51
VPS33A-208ENST00000543633 TNRC6BQ9UPQ9 1833 aaKnown RBP11.88□□□□□ -0.51
VPS33A-208ENST00000543633 C3orf85A0A1B0GTC6 90 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 hCG_38984A0A1B0GV85 526 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 hCG_1809904A0A1W2PP81 198 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 A0A1W2PR64 198 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 A0A1W2PRV1 198 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 LINC00587B1AMM8 73 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF732B4DXR9 585 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 GEMIN2O14893 280 aaKnown RBP11.87□□□□□ -0.51
VPS33A-208ENST00000543633 MPPED1O15442 326 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 ZIC3O60481 467 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 PPYP01298 95 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 FUT3P21217 361 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 AADACP22760 399 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 PPP1CCP36873 323 aaKnown RBP11.87□□□□□ -0.51
VPS33A-208ENST00000543633 FHITP49789 147 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 RPS23P62266 143 aaKnown RBP11.87□□□□□ -0.51
VPS33A-208ENST00000543633 NHLH2Q02577 135 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 HEPN1Q6WQI6 88 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 OR2AE1Q8NHA4 323 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 CD300LFQ8TDQ1 290 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 UCN2Q96RP3 112 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 IER2Q9BTL4 223 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 NIT2Q9NQR4 276 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 ST3GAL6Q9Y274 331 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 IGKV1-12A0A0C4DH73 117 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 IGHV5-10-1A0A0J9YXX1 117 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 IGKV1D-12P01611 117 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 CEACAM1P13688 526 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 NKX2-1P43699 371 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-208ENST00000543633 PCBD1P61457 104 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 FOXO1Q12778 655 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 PIGYQ3MUY2 71 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 TSPO2Q5TGU0 170 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 SP5Q6BEB4 398 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-208ENST00000543633 CLEC9AQ6UXN8 241 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 DPPA2Q7Z7J5 298 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 FAM24BQ8N5W8 94 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 M1APQ8TC57 530 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 TP53RKQ96S44 253 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF700Q9H0M5 742 aa11.87□□□□□ -0.51
VPS33A-208ENST00000543633 LYRM2Q9NU23 88 aaPredicted RBP11.87□□□□□ -0.51
VPS33A-208ENST00000543633 IGHV1-45A0A0A0MS14 117 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 ZNF816-ZNF321PA0A0X1KG74 233 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 A0A1W2PPE2 198 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 RBFOX3A6NFN3 312 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 OR2C1O95371 312 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 LCATP04180 440 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 HSPB1P04792 205 aaKnown RBP11.86□□□□□ -0.51
VPS33A-208ENST00000543633 ATP6V0CP27449 155 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 RAC3P60763 192 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 OR8G1Q15617 311 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 RIPPLY2Q5TAB7 128 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 WDR5BQ86VZ2 330 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 OR2G3Q8NGZ4 309 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 IL22RA2Q969J5 263 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 PAPOLGQ9BWT3 736 aaKnown RBP11.86□□□□□ -0.51
VPS33A-208ENST00000543633 PROK2Q9HC23 129 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 SIRT7Q9NRC8 400 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 IGHV3-15A0A0B4J1V0 119 aa11.86□□□□□ -0.51
VPS33A-208ENST00000543633 A0A0J9YW62 118 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms