RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SIX6O95475 246 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SEMA4FO95754 770 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 NRASP01111 189 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SOD3P08294 240 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ADRA2AP08913 450 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OR5AC1P0C628 307 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 HKR1P10072 659 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ADCYAP1P18509 176 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 AOC1P19801 751 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 NFYBP25208 207 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 MIPP30301 263 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 DCTP40126 519 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 GPR1P46091 355 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 GPR6P46095 362 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF121P58317 390 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 RAB8AP61006 207 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SIRPAP78324 504 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ZXDBP98169 803 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 HOXC5Q00444 222 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 PSG4Q00888 419 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 PLP2Q04941 152 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF415Q09FC8 603 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 BATFQ16520 125 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 C3AR1Q16581 482 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF74Q16587 644 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SP5Q6BEB4 398 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 C22orf42Q6IC83 251 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 DHRS13Q6UX07 377 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 Q6ZSR3 168 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 Q6ZWC4 215 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 TBC1D26Q86UD7 250 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM173Q86WV6 379 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 UMODL1-AS1Q8N2C9 162 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 EID2Q8N6I1 236 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SAMD12Q8N8I0 201 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 FER1L6-AS1Q8NA97 138 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4N2Q8NGD1 307 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 RDH11Q8TC12 318 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 GATAD1Q8WUU5 269 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 HPDLQ96IR7 371 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 GINS3Q9BRX5 216 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OR8D2Q9GZM6 311 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 MAP1LC3AQ9H492 121 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 FBXO6Q9NRD1 293 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 IKZF2Q9UKS7 526 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC7A7Q9UM01 511 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 USP24Q9UPU5 2620 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 EP300Q09472 2414 aaPredicted RBP4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM208BQ5VWN6 2430 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF292O60281 2723 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF705GA8MUZ8 300 aaPredicted RBP4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 F5H5K5 113 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 OR7A17O14581 309 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 CLIC3O95833 236 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 CXCL8P10145 99 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 IRF1P10914 325 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF43P17038 809 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 CD1CP29017 333 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 RPL4P36578 427 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ELK3P41970 407 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 AVPR1BP47901 424 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 NUMBP49757 651 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF84P51523 738 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 HCCSP53701 268 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 NXPH1P58417 271 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 BTG1P62324 171 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 OR2F1Q13607 317 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 MEF2DQ14814 521 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM132DQ14C87 1099 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 MLANAQ16655 118 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 OR10J3Q5JRS4 329 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF343Q6P1L6 599 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 DUX4L9Q6RFH8 374 aaPredicted RBP4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 LRRTM1Q86UE6 522 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 OR10V1Q8NGI7 309 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 OR5W2Q8NH69 310 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 LMO3Q8TAP4 145 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF418Q8TF45 676 aaPredicted RBP4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 DCUN1D4Q92564 292 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM168AQ92567 244 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 OXGR1Q96P68 337 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 SIGLEC12Q96PQ1 595 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 CLCC1Q96S66 551 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ATOH8Q96SQ7 321 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 HIST1H2BLQ99880 126 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 MACROD1Q9BQ69 325 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 SMIM3Q9BZL3 60 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 OR51I2Q9H344 312 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 MRPL17Q9NRX2 175 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 DCAF13Q9NV06 445 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ASB6Q9NWX5 421 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 EXO1Q9UQ84 846 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 TCF19Q9Y242 345 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 CFAP47Q6ZTR5 3102 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 SPTBN2O15020 2390 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 ATRXP46100 2492 aa4.12□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A0G2JND7 137 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A1W2PRF3 423 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A1W2PRM7 423 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 WDR27A2RRH5 827 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms