RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 METAP1DQ6UB28 335 aaPredicted RBP13.23□□□□□ -0.29
USP39-205ENST00000442708 NR2C2APQ86WQ0 139 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 ASCC1Q8N9N2 400 aaKnown RBP13.23□□□□□ -0.29
USP39-205ENST00000442708 TMEM104Q8NE00 496 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 OR4S1Q8NGB4 309 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 C8orf46Q8TAG6 207 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 TBC1D15Q8TC07 691 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 SLC25A28Q96A46 364 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 YIPF6Q96EC8 236 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 CHST6Q9GZX3 395 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 SLITRK2Q9H156 845 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 KCNK15Q9H427 330 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 C7orf69Q9H7B7 122 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 EXOSC4Q9NPD3 245 aaKnown RBP13.23□□□□□ -0.29
USP39-205ENST00000442708 C19orf12Q9NSK7 152 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 SVEP1Q4LDE5 3571 aa13.23□□□□□ -0.29
USP39-205ENST00000442708 TRAV1-2A0A0B4J238 106 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 A0A0G2JK05 382 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 J3QLI3 93 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 SH2D1BO14796 132 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 SLC22A1O15245 554 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 ENSAO43768 121 aaKnown RBP13.22□□□□□ -0.29
USP39-205ENST00000442708 ECDO95905 644 aaPredicted RBP13.22□□□□□ -0.29
USP39-205ENST00000442708 HOXB4P17483 251 aaPredicted RBP13.22□□□□□ -0.29
USP39-205ENST00000442708 LMO1P25800 156 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 OR3A1P47881 315 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 RBM11P57052 281 aaKnown RBP13.22□□□□□ -0.29
USP39-205ENST00000442708 OR10A3P58181 314 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 GLT8D1Q68CQ7 371 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 AWAT2Q6E213 333 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 FIP1L1Q6UN15 594 aaKnown RBP13.22□□□□□ -0.29
USP39-205ENST00000442708 OSR2Q8N2R0 312 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 OR4M1Q8NGD0 313 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 CYYR1Q96J86 154 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 SNX22Q96L94 193 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 CHCHD6Q9BRQ6 235 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 BANF2Q9H503 90 aa13.22□□□□□ -0.29
USP39-205ENST00000442708 SLC33A1O00400 549 aaPredicted RBP13.21□□□□□ -0.29
USP39-205ENST00000442708 GPR37O15354 613 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 PPIAL4GP0DN37 164 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 GABRR1P24046 479 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 BMXP51813 675 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 P2RY14Q15391 338 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 C11orf91Q3C1V1 193 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 NHLRC3Q5JS37 347 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 OR8H2Q8N162 312 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 FOXRED1Q96CU9 486 aaPredicted RBP13.21□□□□□ -0.29
USP39-205ENST00000442708 S100A13Q99584 98 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 CENPOQ9BU64 300 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 FAM234AQ9H0X4 552 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 SSR3Q9UNL2 185 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 ST3GAL6Q9Y274 331 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 AUP1Q9Y679 476 aa13.21□□□□□ -0.29
USP39-205ENST00000442708 TRAV24A0A0B4J272 114 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 MEX3AA1L020 520 aaKnown RBP13.2□□□□□ -0.3
USP39-205ENST00000442708 SMIM30A4D0T7 59 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 SLC17A2O00624 439 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 GEMIN2O14893 280 aaKnown RBP13.2□□□□□ -0.3
USP39-205ENST00000442708 DEGS1O15121 323 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 FSHBP01225 129 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 CSTBP04080 98 aaKnown RBP13.2□□□□□ -0.3
USP39-205ENST00000442708 VSIG8P0DPA2 414 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 MMP9P14780 707 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 ZNF44P15621 663 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 HTR2CP28335 458 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 TGFBR1P36897 503 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 ARF6P62330 175 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 QRFPP83859 136 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 IL13RA2Q14627 380 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 KLF17Q5JT82 389 aaPredicted RBP13.2□□□□□ -0.3
USP39-205ENST00000442708 OR10K2Q6IF99 312 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 BTNL3Q6UXE8 466 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 TPRX1Q8N7U7 411 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 FAM46BQ96A09 425 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 MRI1Q9BV20 369 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 BEX2Q9BXY8 128 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 SIRPDQ9H106 197 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 PPA2Q9H2U2 334 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 VCX3AQ9NNX9 186 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 GLS2Q9UI32 602 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 CDC42EP3Q9UKI2 254 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 V9GY05 133 aa13.2□□□□□ -0.3
USP39-205ENST00000442708 LOC100506127A0A0U1RQW1 187 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 ZNF780AO75290 641 aaPredicted RBP13.19□□□□□ -0.3
USP39-205ENST00000442708 CLEC2LP0C7M8 214 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 GTF2F2P13984 249 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 MGMTP16455 207 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 MYL9P24844 172 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 DLX1P56177 255 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 CLDN12P56749 244 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 RPL31P62899 125 aaKnown RBP13.19□□□□□ -0.3
USP39-205ENST00000442708 UNC119Q13432 240 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 EDDM3AQ14507 147 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 ZNF273Q14593 569 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 GRK1Q15835 563 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 CHRFAM7AQ494W8 412 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 TMEM200BQ69YZ2 307 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 TCF23Q7RTU1 214 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 Q8N7P7 452 aa13.19□□□□□ -0.3
USP39-205ENST00000442708 OR6M1Q8NGM8 313 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms