RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 TPBGQ13641 420 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 BLMHQ13867 455 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 GRK1Q15835 563 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 TMEM200BQ69YZ2 307 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 UNQ9370/PRO34162Q6UXP9 181 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 C17orf107Q6ZR85 190 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 OR8H2Q8N162 312 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 KIR3DL3Q8N743 410 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 Q8N7P7 452 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 TPRX1Q8N7U7 411 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 SIGLECL1Q8N7X8 197 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 OR4S1Q8NGB4 309 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 OR5D13Q8NGL4 314 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 THRSPQ92748 146 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 MDFIQ99750 246 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 METTL9Q9H1A3 318 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 RHOFQ9HBH0 211 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 ISYNA1Q9NPH2 558 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 ACOT13Q9NPJ3 140 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 MXRA5Q9NR99 2828 aa15.34■□□□□ 0.05
SHH-203ENST00000435425 A0A1W2PRD5 423 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 A0A1W2PRF3 423 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 A0A1W2PRM7 423 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 RNF212BA8MTL3 300 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 DEGS1O15121 323 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 RRP9O43818 475 aaKnown RBP15.33■□□□□ 0.04
SHH-203ENST00000435425 CCL3L1P16619 93 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 CPEP16870 476 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 KLRD1Q13241 179 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 TBCEQ15813 527 aaPredicted RBP15.33■□□□□ 0.04
SHH-203ENST00000435425 RBMS3Q6XE24 437 aaKnown RBP15.33■□□□□ 0.04
SHH-203ENST00000435425 ZNF367Q7RTV3 350 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 MUL1Q969V5 352 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 DMRTB1Q96MA1 342 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 SEBOXQ9HB31 216 aaPredicted RBP15.33■□□□□ 0.04
SHH-203ENST00000435425 TCF7L1Q9HCS4 588 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 ING3Q9NXR8 418 aa15.33■□□□□ 0.04
SHH-203ENST00000435425 MDFIC2A0A1B0GVS7 189 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 M0R1W7 72 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 CSTBP04080 98 aaKnown RBP15.32■□□□□ 0.04
SHH-203ENST00000435425 SERPINA2P20848 420 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 BMXP51813 675 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 EMX1Q04741 257 aaPredicted RBP15.32■□□□□ 0.04
SHH-203ENST00000435425 ZNF273Q14593 569 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 PIGYQ3MUY2 71 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 ELP2Q6IA86 826 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 Q6P435 159 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 SVOPQ8N4V2 548 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 PPP1R35Q8TAP8 253 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 ZNF48Q96MX3 618 aaPredicted RBP15.32■□□□□ 0.04
SHH-203ENST00000435425 YTHDF1Q9BYJ9 559 aaKnown RBP15.32■□□□□ 0.04
SHH-203ENST00000435425 PPA2Q9H2U2 334 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 MRPS28Q9Y2Q9 187 aaKnown RBP15.32■□□□□ 0.04
SHH-203ENST00000435425 DSCAML1Q8TD84 2053 aa15.32■□□□□ 0.04
SHH-203ENST00000435425 IGHV1-69DA0A0B4J2H0 117 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 A0A1W2PPH5 198 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 HSPB6O14558 160 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 IGHV1-69P01742 117 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 OR3A1P47881 315 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 GP2P55259 537 aaKnown RBP15.31■□□□□ 0.04
SHH-203ENST00000435425 ERVFRD-1P60508 538 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 SLC22A6Q4U2R8 563 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 HSD17B12Q53GQ0 312 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 ASCL4Q6XD76 172 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 PHC2Q8IXK0 858 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 TBC1D15Q8TC07 691 aa15.31■□□□□ 0.04
SHH-203ENST00000435425 PPIL3Q9H2H8 161 aaKnown RBP15.31■□□□□ 0.04
SHH-203ENST00000435425 A0A0A6YYJ9 748 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 A0A0G2JK05 382 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 A0A1W2PP11 408 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 RNASEK-C17orf49H0YIS7 233 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 SLC33A1O00400 549 aaPredicted RBP15.3■□□□□ 0.04
SHH-203ENST00000435425 MGST3O14880 152 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 MRPS14O60783 128 aaKnown RBP15.3■□□□□ 0.04
SHH-203ENST00000435425 HILS1P60008 231 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 TRAM1Q15629 374 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 DEFB112Q30KQ8 113 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 KRTAP24-1Q3LI83 254 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 AWAT2Q6E213 333 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 GLIPR1L1Q6UWM5 242 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 TMEM91Q6ZNR0 172 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 SPARTQ8N0X7 666 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 OSR2Q8N2R0 312 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 TMEM158Q8WZ71 300 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 ZDHHC16Q969W1 377 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 DUX5Q96PT3 197 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 JMJD8Q96S16 334 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 METTL8Q9H825 291 aaKnown RBP15.3■□□□□ 0.04
SHH-203ENST00000435425 ST3GAL6Q9Y274 331 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 SF3B6Q9Y3B4 125 aaKnown RBP15.3■□□□□ 0.04
SHH-203ENST00000435425 LRRC42Q9Y546 428 aa15.3■□□□□ 0.04
SHH-203ENST00000435425 MEGF11A6BM72 1044 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 SC5DO75845 299 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 SRMP19623 302 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 LMO1P25800 156 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 BPIFB3P59826 476 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 FABP5Q01469 135 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 AESQ08117 197 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 BAMBIQ13145 260 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 METAP1DQ6UB28 335 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms