RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 PECRQ9BY49 303 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 OR8D2Q9GZM6 311 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 GPR84Q9NQS5 396 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 SEMA5BQ9P283 1151 aa12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 MCTS1Q9ULC4 181 aaKnown RBP12.85□□□□□ -0.35
NCKIPSD-204ENST00000416649 NBEAQ8NFP9 2946 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 NPIPA5E9PKD4 350 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 PHF1O43189 567 aaPredicted RBP12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 RPLP1P05386 114 aaKnown RBP12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 CST2P09228 141 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 ERVFC1-1P60608 527 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 RPP30P78346 268 aaKnown RBP12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 PPA1Q15181 289 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 ADIRFQ15847 76 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF506Q5JVG8 444 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 SLC25A24Q6NUK1 477 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 SLC16A14Q7RTX9 510 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 LGI3Q8N145 548 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 FBXL14Q8N1E6 418 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 OR11L1Q8NGX0 322 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 CLDND2Q8NHS1 167 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 RNASEH2CQ8TDP1 164 aaKnown RBP12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 ADAMTS18Q8TE60 1221 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 TMEM171Q8WVE6 324 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 CCNL2Q96S94 520 aaPredicted RBP12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 SYT3Q9BQG1 590 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 PLEKHJ1Q9NW61 149 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 NPIPA1Q9UND3 350 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 PRR19A6NJB7 356 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 SSSCA1O60232 199 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 CYB5R3P00387 301 aaPredicted RBP12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF728P0DKX0 622 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 GP1BBP13224 206 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 OR3A1P47881 315 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 CARFQ8N187 725 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 ZNF283Q8N7M2 679 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 FAM131CQ96AQ9 280 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 NUDT22Q9BRQ3 303 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 PNO1Q9NRX1 252 aaKnown RBP12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 TTC28Q96AY4 2481 aa12.84□□□□□ -0.35
NCKIPSD-204ENST00000416649 PCDH15Q96QU1 1955 aa12.83□□□□□ -0.35
NCKIPSD-204ENST00000416649 A0A1B0GU03 582 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 IGSF23A1L1A6 192 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 TK1P04183 234 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 FGF5P12034 268 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 ANOS1P23352 680 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 CSNK1A1P48729 337 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 FGF8P55075 233 aaPredicted RBP12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 HHEXQ03014 270 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 IL13RA2Q14627 380 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 IQCJQ1A5X6 159 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 ARSJQ5FYB0 599 aaPredicted RBP12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 KIAA0895LQ68EN5 471 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 LCN15Q6UWW0 184 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 WDFY1Q8IWB7 410 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 KLHDC7BQ96G42 594 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 RCC1LQ96I51 464 aaKnown RBP12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 BOD1Q96IK1 185 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 NUDT16L1Q9BRJ7 211 aaKnown RBP12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 FAAP24Q9BTP7 215 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 LIME1Q9H400 295 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 CALHM2Q9HA72 323 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 FBRSQ9HAH7 460 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 MYOTQ9UBF9 498 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 SRFP11831 508 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 ELLP55199 621 aaPredicted RBP12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 POU3F1Q03052 451 aaPredicted RBP12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 TMEM187Q14656 261 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 C11orf40Q8WZ69 217 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 TMEM18Q96B42 140 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 NAA60Q9H7X0 242 aa12.83□□□□□ -0.36
NCKIPSD-204ENST00000416649 DEFB133Q30KQ1 61 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 FNDC7Q5VTL7 733 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 LMX1AQ8TE12 382 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 RNF133Q8WVZ7 376 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 FUT9Q9Y231 359 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 GPR179Q6PRD1 2367 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 TMED7-TICAM2A0A0A6YYA0 188 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 A0A1W2PPQ1 181 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 B4DEV8 164 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 PLPP3O14495 311 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 HLA-HP01893 362 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 OPN1MWP04001 364 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 OPN1MW2P0DN77 364 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 OPN1MW3P0DN78 364 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 WNT5AP41221 380 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 HNRNPKP61978 463 aaKnown RBP eCLIP12.82□□□□□ -0.361e-6■■□□□ 12.4
NCKIPSD-204ENST00000416649 SMAD4Q13485 552 aaKnown RBP12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 TRA2AQ13595 282 aaKnown RBP eCLIP12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 RSPO4Q2I0M5 234 aaPredicted RBP12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 ANKRD39Q53RE8 183 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 DNM1P34Q6PK57 102 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 BRICD5Q6PL45 260 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 BAHD1Q8TBE0 780 aaPredicted RBP12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 LIN37Q96GY3 246 aaPredicted RBP12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 ZNF665Q9H7R5 613 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 FBLN5Q9UBX5 448 aa12.82□□□□□ -0.36
NCKIPSD-204ENST00000416649 SPTY2D1-AS1A0A0U1RR47 76 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms