RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TM4SF18Q96CE8 201 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 ARSAP15289 507 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 MRGPREQ86SM8 312 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 RNF133Q8WVZ7 376 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 TGIF2-C20orf24A0A0A6YYL0 155 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 RPL18Q07020 188 aaKnown RBP11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 TMEM95Q3KNT9 176 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 PELI3Q8N2H9 469 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 ALKBH7Q9BT30 221 aaPredicted RBP11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 UNCXA6NJT0 531 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 HOXA6P31267 233 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 GZMKP49863 264 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 LRRC75AQ8NAA5 344 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 SIRT5Q9NXA8 310 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 KLK11Q9UBX7 282 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF391Q9UJN7 358 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 EMCNQ9ULC0 261 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 MYOFQ9NZM1 2061 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 ARRDC5A6NEK1 342 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 DEFB108AA8MXU0 73 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 DHRS2Q13268 280 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 MEIG1Q5JSS6 88 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 TMEM207Q6UWW9 146 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 ADAMTSL4Q6UY14 1074 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 OR1N1Q8NGS0 311 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 VSTM2AQ8TAG5 236 aa11.94□□□□□ -0.5
CCDC88A-204ENST00000413716 TRAV39A0A0B4J263 110 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 LPAR6P43657 344 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 OR2C3Q8N628 320 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 SMAD6O43541 496 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 HOXC4P09017 264 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 MAS1LP35410 378 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 GPR3P46089 330 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 TRAF4Q9BUZ4 470 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 FAM53CQ9NYF3 392 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 PPIL1Q9Y3C6 166 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 SOX4Q06945 474 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 GEMIN7Q9H840 131 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 MYLKQ15746 1914 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 C9orf170A2RU37 121 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 C1QTNF9BB2RNN3 333 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 DCCP43146 1447 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 DMRTA2Q96SC8 542 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 SPRY3O43610 288 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 GP1BAP07359 652 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 NSUN5P2Q63ZY6 315 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 LAT2Q9GZY6 243 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 HMSDA8MTL9 139 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 ATF1P18846 271 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 RTL10Q7L3V2 364 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 MPC2O95563 127 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 OR5AC1P0C628 307 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 AVPR2P30518 371 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 BTG2P78543 158 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF324BQ6AW86 544 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 PRNTQ86SH4 94 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 SARAFQ96BY9 339 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 ATOH8Q96SQ7 321 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF665Q9H7R5 613 aa11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 MBNL1Q9NR56 388 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-204ENST00000413716 CSNK1DP48730 415 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 CSNK1EP49674 416 aaKnown RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 SP6Q3SY56 376 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 JMJD6Q6NYC1 403 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 F11RQ9Y624 299 aaKnown RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 FREM3P0C091 2139 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 PITX1P78337 314 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 CDK5R1Q15078 307 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 NHLRC1Q6VVB1 395 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 FAM219AQ8IW50 185 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 OR10AG1Q8NH19 301 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 PEF1Q9UBV8 284 aaKnown RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 GPX5O75715 221 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 CDS2O95674 445 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 IQCF3P0C7M6 154 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 FAM157CP0CG43 387 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 ZNF137PP52743 207 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 MOGAT3Q86VF5 341 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 SARGQ9BW04 601 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 PCOLCE2Q9UKZ9 415 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 NCOR1O75376 2440 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 TSPAN12O95859 305 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 CKS2P33552 79 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 POLR2IP36954 125 aaKnown RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 C10orf128Q5T292 105 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 WDR25Q64LD2 544 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 NAT2P11245 290 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 PWWP2BQ6NUJ5 590 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 DEFB127Q9H1M4 99 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 F2RL2O00254 374 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 ROM1Q03395 351 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 PHLDA1Q8WV24 401 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 ASCL3Q9NQ33 180 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 RBM11P57052 281 aaKnown RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 LTB4R2Q9NPC1 389 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 NRG2O14511 850 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 GHRHP01286 108 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 DLX6P56179 175 aa11.92□□□□□ -0.5
CCDC88A-204ENST00000413716 SLC35B1P78383 322 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms