RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ECI1P42126 302 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 FUT6P51993 359 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 ANKRD55Q3KP44 614 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 PLCXD3Q63HM9 321 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 NSUN5P2Q63ZY6 315 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 TMEM211Q6ICI0 200 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 C9orf106Q8NAJ2 232 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 NAXEQ8NCW5 288 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 PXT1Q8NFP0 134 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 PHYHIPLQ96FC7 376 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF75AQ96N20 296 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 ARPC5LQ9BPX5 153 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 CALHM2Q9HA72 323 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 RASL12Q9NYN1 266 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 ARHGAP21Q5T5U3 1957 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 CLEC18AA5D8T8 446 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 NUP62P37198 522 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-202ENST00000374876 FAM74A1Q5RGS3 127 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 ASCL4Q6XD76 172 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 MOB3CQ70IA8 216 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 CLEC18CQ8NCF0 446 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 FNDC9Q8TBE3 224 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 PIGCQ92535 297 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 RND1Q92730 232 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 TECTBQ96PL2 329 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 MICU1Q9BPX6 476 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 CMSS1Q9BQ75 279 aaKnown RBP13.36□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF2Q9BSG1 426 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-202ENST00000374876 LINC00470Q9BZP3 86 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 SLC7A10Q9NS82 523 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 AK3Q9UIJ7 227 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 ANXA10Q9UJ72 324 aa13.36□□□□□ -0.27
CCDC40-202ENST00000374876 A0A0G2JNJ9 132 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF816-ZNF321PA0A0X1KG74 233 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 A8MXK9 166 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 KCNAB3O43448 404 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 ARF1P84077 181 aaKnown RBP13.35□□□□□ -0.27
CCDC40-202ENST00000374876 CDSNQ15517 529 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 OR8B8Q15620 311 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 MRGPRGQ86SM5 289 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 OSR2Q8N2R0 312 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 CPEB3Q8NE35 698 aaKnown RBP13.35□□□□□ -0.27
CCDC40-202ENST00000374876 LINC00052Q96N35 136 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 C1QTNF5Q9BXJ0 243 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 CLCF1Q9UBD9 225 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 Q9UFV3 132 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 KRBOX1C9JBD0 128 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 FGF2P09038 288 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 PDZK1IP1Q13113 114 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 C9orf135Q5VTT2 229 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 HSD17B13Q7Z5P4 300 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-202ENST00000374876 TUSC5Q8IXB3 177 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 BVESQ8NE79 360 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 MRPS24Q96EL2 167 aaKnown RBP13.35□□□□□ -0.27
CCDC40-202ENST00000374876 PRRG4Q9BZD6 226 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 PCDHB16Q9NRJ7 776 aa13.35□□□□□ -0.27
CCDC40-202ENST00000374876 MED12LQ86YW9 2145 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 TRBV6-7A0A0A0MS04 114 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 IGKV1-12A0A0C4DH73 117 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 MBD3L4A6NDZ8 208 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-202ENST00000374876 MBD3L3A6NE82 208 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-202ENST00000374876 MBD3L5A6NJ08 208 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-202ENST00000374876 SLC22A20A6NK97 555 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF587BE7ETH6 402 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 GEMIN2O14893 280 aaKnown RBP13.34□□□□□ -0.27
CCDC40-202ENST00000374876 IFNA2P01563 188 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 IGKV1D-12P01611 117 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 RPS2P15880 293 aaKnown RBP13.34□□□□□ -0.27
CCDC40-202ENST00000374876 DTYMKP23919 212 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 CHATP28329 748 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 PIGYQ3MUY2 71 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 P4HA3Q7Z4N8 544 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 GCNT2Q8N0V5 402 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 FBXL14Q8N1E6 418 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 MBD3L2Q8NHZ7 208 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-202ENST00000374876 SPSB4Q96A44 273 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 RNF126Q9BV68 326 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 BCO1Q9HAY6 547 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF581Q9P0T4 197 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 ATPIF1Q9UII2 106 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 A0A096LPE4 126 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 TEX13DA0A0J9YY54 714 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-202ENST00000374876 A0A1W2PPZ6 126 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF850A8MQ14 1090 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 MPTX1A8MV57 137 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 OR5H8P0DN80 308 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 CCNOP22674 350 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 TIMP3P35625 211 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 FOXF2Q12947 444 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 UNQ6126/PRO20091Q6UXV3 157 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 OR10AD1Q8NGE0 317 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 OR51F2Q8NH61 342 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 ITLN2Q8WWU7 325 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-202ENST00000374876 WNT2BQ93097 391 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 C2orf50Q96LR7 162 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 DOCK7Q96N67 2140 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 SULT4A1Q9BR01 284 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 NECAP2Q9NVZ3 263 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 IL36GQ9NZH8 169 aa13.34□□□□□ -0.27
CCDC40-202ENST00000374876 ST3GAL6Q9Y274 331 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms