RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 SLC25A6P12236 298 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 MMP9P14780 707 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 TIMP3P35625 211 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 CD200P41217 278 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 HAAOP46952 286 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 NPY4RP50391 375 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 CCL11P51671 97 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 PAX5Q02548 391 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 NKAPLQ5M9Q1 402 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 SIGIRRQ6IA17 410 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 TRAT1Q6PIZ9 186 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 Q6ZS92 163 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 GAPTQ8N292 157 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 STPG2Q8N412 459 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 TCTEX1D1Q8N7M0 179 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 ZBTB34Q8NCN2 500 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 FDCSPQ8NFU4 85 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 OR5D18Q8NGL1 313 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 MBD3L2Q8NHZ7 208 aaPredicted RBP7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 FGFBP3Q8TAT2 258 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 NPRL2Q8WTW4 380 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 WDR89Q96FK6 387 aaPredicted RBP7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 FAAP24Q9BTP7 215 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 HES7Q9BYE0 225 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 SHARPINQ9H0F6 387 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 DEFB127Q9H1M4 99 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 NAA60Q9H7X0 242 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 PARD6AQ9NPB6 346 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 FAM212BQ9NTI7 297 aaPredicted RBP7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 SPRR3Q9UBC9 169 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 NUP50Q9UKX7 468 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 KCNMB2Q9Y691 235 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 TNRC6AQ8NDV7 1962 aaKnown RBP7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 PHF3Q92576 2039 aaKnown RBP7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 DOCK10Q96BY6 2186 aa7.49□□□□□ -1.21
SNRNP40-202ENST00000373720 A0A1W2PP11 408 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 RPS10-NUDT3A0A1W2PQS6 291 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 LEUTXA8MZ59 168 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 E5RGE8 158 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 IFNL4K9M1U5 179 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 MASP2O00187 686 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 SH2D1BO14796 132 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 GEMIN2O14893 280 aaKnown RBP7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 SPRY1O43609 319 aaPredicted RBP7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 JTBO76095 146 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 PDGFAP04085 211 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 GAPDHP04406 335 aaKnown RBP7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 CSN2P05814 226 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 SFTPBP07988 381 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 RPS2P15880 293 aaKnown RBP7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 KITLGP21583 273 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 SERPINF1P36955 418 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 UCP2P55851 309 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 SUPT4H1P63272 117 aaKnown RBP7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 IL15RAQ13261 267 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 ZNF146Q15072 292 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 TGIF1Q15583 401 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 DCAF12L2Q5VW00 463 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 ZNF880Q6PDB4 577 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 CCDC28AQ8IWP9 274 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 FAM58AQ8N1B3 248 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 RNF141Q8WVD5 230 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 RTN4IP1Q8WWV3 396 aaPredicted RBP7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 ST8SIA2Q92186 375 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 PCSK5Q92824 1860 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 EXTL1Q92935 676 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 TMEM230Q96A57 120 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 SAT2Q96F10 170 aaPredicted RBP7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 KIRREL1Q96J84 757 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 OR51I2Q9H344 312 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 Q9N2K0 584 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 NSG2Q9Y328 171 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 PCNX2A6NKB5 2137 aa7.48□□□□□ -1.21
SNRNP40-202ENST00000373720 LAMA1P25391 3075 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 A0A096LPE4 126 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 TRAV14DV4A0A0A6YYC5 116 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 IGKV1-12A0A0C4DH73 117 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 A0A1W2PPZ6 126 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 RAB19A4D1S5 217 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 CLEC18AA5D8T8 446 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 C5orf63A6NC05 138 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 A6NL46 340 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 NKX2-8O15522 239 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 ANGPTL7O43827 346 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 TUSC2O75896 110 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 ATG12O94817 140 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 F10P00742 488 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 IGKV1D-12P01611 117 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 PATE4P0C8F1 98 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 PVALBP20472 110 aaPredicted RBP7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 CCNOP22674 350 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 LMO1P25800 156 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 DUSP1P28562 367 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 SSTR2P30874 369 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 CFHR2P36980 270 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 RAB5CP51148 216 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 PPP1CBP62140 327 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 RPS23P62266 143 aaKnown RBP7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 ZNF718Q3SXZ3 478 aa7.47□□□□□ -1.21
SNRNP40-202ENST00000373720 MBNL2Q5VZF2 373 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms