RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 FBXO17Q96EF6 278 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 LRFN3Q9BTN0 628 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 NAT8BQ9UHF3 227 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 CNOT1A5YKK6 2376 aaKnown RBP10.1□□□□□ -0.79
PTPRF-203ENST00000372407 TRAV8-7A0A075B6U6 113 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 A0A1W2PPV9 198 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 NTN1O95631 604 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 HNRNPA3P51991 378 aaKnown RBP10.1□□□□□ -0.79
PTPRF-203ENST00000372407 SSPNQ14714 243 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 Q3ZCU0 254 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 ASB5Q8WWX0 329 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 MOB3AQ96BX8 217 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 NEIL1Q96FI4 390 aaPredicted RBP10.1□□□□□ -0.79
PTPRF-203ENST00000372407 GPA33Q99795 319 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 KCNK15Q9H427 330 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 GPR27Q9NS67 375 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 LPAR3Q9UBY5 353 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 CDC34P49427 236 aaPredicted RBP10.1□□□□□ -0.79
PTPRF-203ENST00000372407 HLA-DRB3P79483 266 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 PNRC1Q12796 327 aaPredicted RBP10.1□□□□□ -0.79
PTPRF-203ENST00000372407 MOB3BQ86TA1 216 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 BVESQ8NE79 360 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 BCL2L2Q92843 193 aaPredicted RBP10.1□□□□□ -0.79
PTPRF-203ENST00000372407 C10orf35Q96D05 121 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 VPS25Q9BRG1 176 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 CLEC1BQ9P126 229 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 B3GALNT1O75752 331 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 ZNF250P15622 560 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 OR3A1P47881 315 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 RAB7AP51149 207 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 SLC25A42Q86VD7 318 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 VAMP8Q9BV40 100 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 SF3B5Q9BWJ5 86 aaKnown RBP10.1□□□□□ -0.79
PTPRF-203ENST00000372407 PPP1R3EQ9H7J1 279 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 PCOLCE2Q9UKZ9 415 aa10.1□□□□□ -0.79
PTPRF-203ENST00000372407 ZNF737O75373 536 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 RHOBP62745 196 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 IFITM3Q01628 133 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 KLF9Q13886 244 aaPredicted RBP10.09□□□□□ -0.79
PTPRF-203ENST00000372407 RNF151Q2KHN1 245 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 LGALSLQ3ZCW2 172 aaPredicted RBP10.09□□□□□ -0.79
PTPRF-203ENST00000372407 DHRS13Q6UX07 377 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 TOMM20LQ6UXN7 152 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 OR11H7Q8NGC8 314 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 OR10AD1Q8NGE0 317 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 NOL4LQ96MY1 436 aaPredicted RBP10.09□□□□□ -0.79
PTPRF-203ENST00000372407 MED19A0JLT2 244 aaPredicted RBP10.09□□□□□ -0.79
PTPRF-203ENST00000372407 C7orf66A4D0T2 115 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 SYNGR2O43760 224 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 MT-CO3P00414 261 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 GALR1P47211 349 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 COL19A1Q14993 1142 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 TMEM147Q9BVK8 224 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 IL36GQ9NZH8 169 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 R4GN57 208 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 RBFOX3A6NFN3 312 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 FGF2P09038 288 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 GNB2P62879 340 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 HIST1H3AP68431 136 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 ZXDAP98168 799 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 ALKBH6Q3KRA9 238 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 SFTPA1Q8IWL2 248 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 OR10G4Q8NGN3 311 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 OR10G9Q8NGN4 311 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 OR10G7Q8NGN6 311 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 TRMT61AQ96FX7 289 aaKnown RBP10.09□□□□□ -0.79
PTPRF-203ENST00000372407 ESRP2Q9H6T0 727 aaKnown RBP10.09□□□□□ -0.79
PTPRF-203ENST00000372407 SLC25A22Q9H936 323 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 OTOFQ9HC10 1997 aa10.09□□□□□ -0.79
PTPRF-203ENST00000372407 SPTBN2O15020 2390 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 LEUTXA8MZ59 168 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 OPN1MWP04001 364 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 OPN1MW2P0DN77 364 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 OPN1MW3P0DN78 364 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 PMCHP20382 165 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 SKP2Q13309 424 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 EIF4EBP2Q13542 120 aaPredicted RBP10.08□□□□□ -0.8
PTPRF-203ENST00000372407 KHDC1LQ5JSQ8 128 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 FA2HQ7L5A8 372 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 OR2Y1Q8NGV0 311 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 LINC00052Q96N35 136 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 ZFC3H1O60293 1989 aaKnown RBP10.08□□□□□ -0.8
PTPRF-203ENST00000372407 MEX3AA1L020 520 aaKnown RBP10.08□□□□□ -0.8
PTPRF-203ENST00000372407 DEFB108AA8MXU0 73 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 P2RY1P47900 373 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 MEOX1P50221 254 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 ZNF83P51522 516 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 ACSM6Q6P461 480 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 NHLRC2Q8NBF2 726 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 RNF133Q8WVZ7 376 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 OR2D2Q9H210 308 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 MYOZ1Q9NP98 299 aaPredicted RBP10.08□□□□□ -0.8
PTPRF-203ENST00000372407 A0A1W2PR80 420 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 TCRBV16S1A1N1A0A5B0 115 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 HLA-GP17693 338 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 MPLP40238 635 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 BSXQ3C1V8 233 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 DHRS7BQ6IAN0 325 aaPredicted RBP10.08□□□□□ -0.8
PTPRF-203ENST00000372407 MS4A10Q96PG2 267 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 AAMDCQ9H7C9 122 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms