RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 COX15Q7KZN9 410 aa13.73□□□□□ -0.21
RTN3-205ENST00000356000 TMEM171Q8WVE6 324 aa13.73□□□□□ -0.21
RTN3-205ENST00000356000 BCL2L2Q92843 193 aaPredicted RBP13.73□□□□□ -0.21
RTN3-205ENST00000356000 TXN2Q99757 166 aa13.73□□□□□ -0.21
RTN3-205ENST00000356000 DNAJB12Q9NXW2 375 aaKnown RBP13.73□□□□□ -0.21
RTN3-205ENST00000356000 KIAA1549LQ6ZVL6 1849 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 ESDP10768 282 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 ARR3P36575 388 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 MPLP40238 635 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 ECI1P42126 302 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 EMDP50402 254 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 CTXN1P60606 82 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 NHLH1Q02575 133 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 ROM1Q03395 351 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 ZP2Q05996 745 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 TMEM41BQ5BJD5 291 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 SULF2Q8IWU5 870 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 OR2C3Q8N628 320 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 OR52M1Q8NGK5 317 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 DYRK2Q92630 601 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 OR51I2Q9H344 312 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 C11orf1Q9H5F2 150 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 DOCK8Q8NF50 2099 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 RNF212BA8MTL3 300 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 SOCS1O15524 211 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 LMX1BO60663 402 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 CDS2O95674 445 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 CSNK2A1P68400 391 aaPredicted RBP13.72□□□□□ -0.21
RTN3-205ENST00000356000 LCN2P80188 198 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 EXOSC7Q15024 291 aaKnown RBP13.72□□□□□ -0.21
RTN3-205ENST00000356000 SLC22A24Q8N4F4 322 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 CSNK2A3Q8NEV1 391 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 OVCA2Q8WZ82 227 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 HSPB9Q9BQS6 159 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 CLEC4EQ9ULY5 219 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 HIF3AQ9Y2N7 669 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 PXMP4Q9Y6I8 212 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 CENPFP49454 3210 aa13.72□□□□□ -0.21
RTN3-205ENST00000356000 FAM24AA6NFZ4 105 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 TIAF1O95411 115 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 DUSP1P28562 367 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 VIPR2P41587 438 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 RPL23P62829 140 aaKnown RBP13.71□□□□□ -0.21
RTN3-205ENST00000356000 NSDHLQ15738 373 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 SPATA45Q537H7 98 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 ZAR1Q86SH2 424 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 C1orf174Q8IYL3 243 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 ANAPC16Q96DE5 110 aa13.71□□□□□ -0.21
RTN3-205ENST00000356000 A0A0C4DFX4 3053 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 LOC107986453A0A1B0GWG9 222 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 METTL12A8MUP2 240 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 K7EQS6 105 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 CD70P32970 193 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 BIDP55957 195 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 TMEM50BP56557 158 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 TFF2Q03403 129 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 SQSTM1Q13501 440 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 GNMTQ14749 295 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 RSPO2Q6UXX9 243 aaPredicted RBP13.71□□□□□ -0.22
RTN3-205ENST00000356000 AMZ2Q86W34 360 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 SMIM7Q9BQ49 75 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 MRPL27Q9P0M9 148 aaKnown RBP13.71□□□□□ -0.22
RTN3-205ENST00000356000 CLN8Q9UBY8 286 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 MRPS16Q9Y3D3 137 aaKnown RBP13.71□□□□□ -0.22
RTN3-205ENST00000356000 TRAPPC1Q9Y5R8 145 aa13.71□□□□□ -0.22
RTN3-205ENST00000356000 IGSF23A1L1A6 192 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 AQP7P3A6NL99 342 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 ISG15P05161 165 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 FAHP16930 419 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 BCL6P41182 706 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 HINT1P49773 126 aaPredicted RBP13.7□□□□□ -0.22
RTN3-205ENST00000356000 SNU13P55769 128 aaKnown RBP13.7□□□□□ -0.22
RTN3-205ENST00000356000 SHBQ15464 509 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 VAMP3Q15836 100 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 SMIM21Q3B7S5 101 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 TMEM95Q3KNT9 176 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 PRR27Q6MZM9 219 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 LYZL2Q7Z4W2 148 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 FAM71F1Q96KD3 344 aaPredicted RBP13.7□□□□□ -0.22
RTN3-205ENST00000356000 ST6GALNAC5Q9BVH7 336 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 ZNF665Q9H7R5 613 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 C19orf53Q9UNZ5 99 aaPredicted RBP13.7□□□□□ -0.22
RTN3-205ENST00000356000 SLC5A6Q9Y289 635 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 IGKV1-8A0A0C4DH67 115 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 OR6C6A6NF89 314 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 OR5B21A6NL26 309 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 SUMO1P63165 101 aaKnown RBP13.7□□□□□ -0.22
RTN3-205ENST00000356000 BTN3A2P78410 334 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 TMEM187Q14656 261 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 ALG10Q5BKT4 473 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 SLC18B1Q6NT16 456 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 SAXO1Q8IYX7 474 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 LRTM2Q8N967 370 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 OR5D18Q8NGL1 313 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 DDIT4LQ96D03 193 aa13.7□□□□□ -0.22
RTN3-205ENST00000356000 RENP00797 406 aa13.69□□□□□ -0.22
RTN3-205ENST00000356000 PDGFBP01127 241 aaPredicted RBP13.69□□□□□ -0.22
RTN3-205ENST00000356000 RAB28P51157 221 aa13.69□□□□□ -0.22
RTN3-205ENST00000356000 RUNX1Q01196 453 aa13.69□□□□□ -0.22
RTN3-205ENST00000356000 SNAI3Q3KNW1 292 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms