RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NFAM1Q8NET5 270 aaPredicted RBP19.41■□□□□ 0.7
TRIM28-202ENST00000341753 TMEM171Q8WVE6 324 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 PLEK2Q9NYT0 353 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 TREM2Q9NZC2 230 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 M0R135 149 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 HSD17B6O14756 317 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 MSR1P21757 451 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 MAS1LP35410 378 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 HIKESHIQ53FT3 197 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 ZNF610Q8N9Z0 462 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 PLPP5Q8NEB5 264 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 LFNGQ8NES3 379 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 ZNF799Q96GE5 643 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 SUCNR1Q9BXA5 334 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 METTL9Q9H1A3 318 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 HSF4Q9ULV5 492 aa19.41■□□□□ 0.7
TRIM28-202ENST00000341753 CYB5BO43169 146 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 CST7O76096 145 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 KCNMB1Q16558 191 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 RTL6Q6ICC9 239 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 OR2C3Q8N628 320 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 GPR61Q9BZJ8 451 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 PARPBPQ9NWS1 579 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 SLC7A11Q9UPY5 501 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 SSSCA1O60232 199 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 CA11O75493 328 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 ZNF429Q86V71 674 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 GJC3Q8NFK1 279 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 DNASE2BQ8WZ79 361 aa19.4■□□□□ 0.7
TRIM28-202ENST00000341753 ZNF837Q96EG3 531 aaPredicted RBP19.4■□□□□ 0.7
TRIM28-202ENST00000341753 ZNF385AQ96PM9 386 aaKnown RBP19.4■□□□□ 0.7
TRIM28-202ENST00000341753 CELSR3Q9NYQ7 3312 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BKO60814 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 TRGC2P03986 189 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BJP06899 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 SRP19P09132 144 aaKnown RBP19.39■□□□□ 0.7
TRIM28-202ENST00000341753 JMJD7P0C870 316 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BOP23527 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BBP33778 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BDP58876 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BCP62807 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST2H2BEQ16778 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST2H2BFQ5QNW6 126 aaPredicted RBP19.39■□□□□ 0.7
TRIM28-202ENST00000341753 FBXL14Q8N1E6 418 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 SPEM1Q8N4L4 309 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BHQ93079 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BNQ99877 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 HIST1H2BMQ99879 126 aa19.39■□□□□ 0.7
TRIM28-202ENST00000341753 A0A0U1RQV5 110 aa19.39■□□□□ 0.69
TRIM28-202ENST00000341753 SOD3P08294 240 aa19.39■□□□□ 0.69
TRIM28-202ENST00000341753 AADACP22760 399 aa19.39■□□□□ 0.69
TRIM28-202ENST00000341753 OR10AD1Q8NGE0 317 aa19.39■□□□□ 0.69
TRIM28-202ENST00000341753 OR4D5Q8NGN0 318 aa19.39■□□□□ 0.69
TRIM28-202ENST00000341753 EXPH5Q8NEV8 1989 aa19.39■□□□□ 0.69
TRIM28-202ENST00000341753 CXorf65A6NEN9 183 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 NKAIN1Q4KMZ8 207 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 S100PBPQ96BU1 408 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 A0A1W2PQM1 296 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 K7ESF4 209 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 EPHA1P21709 976 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 Q6ZPA2 131 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 OR14L1PQ8NHC6 308 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 AQP7P3A6NL99 342 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 C4orf17Q53FE4 359 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 CXorf66Q5JRM2 361 aaPredicted RBP19.38■□□□□ 0.69
TRIM28-202ENST00000341753 LRTM2Q8N967 370 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 OR2M3Q8NG83 312 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 OR5C1Q8NGR4 320 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 INTS12Q96CB8 462 aaKnown RBP19.38■□□□□ 0.69
TRIM28-202ENST00000341753 GLRX2Q9NS18 164 aa19.38■□□□□ 0.69
TRIM28-202ENST00000341753 TLX3O43711 291 aaPredicted RBP19.37■□□□□ 0.69
TRIM28-202ENST00000341753 CTSSP25774 331 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 CCL7P80098 99 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 ICAM4Q14773 271 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 WDR74Q6RFH5 385 aaPredicted RBP19.37■□□□□ 0.69
TRIM28-202ENST00000341753 UCN2Q96RP3 112 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 IGKV1-12A0A0C4DH73 117 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 ETV2O00321 342 aaPredicted RBP19.37■□□□□ 0.69
TRIM28-202ENST00000341753 IGKV1D-12P01611 117 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 RNF224P0DH78 156 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 CXCL12P48061 93 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 SLC25A53Q5H9E4 307 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 RHBDD2Q6NTF9 364 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 UNQ6494/PRO21346Q6UXR6 183 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 PCED1AQ9H1Q7 454 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 PRDM13Q9H4Q3 707 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 SEMA5BQ9P283 1151 aa19.37■□□□□ 0.69
TRIM28-202ENST00000341753 SCRG1O75711 98 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 HERV-K104P61576 105 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 NABP1Q96AH0 204 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 PRO1933Q9H354 126 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 ADAMTS20P59510 1910 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 A0A1B0GW64 132 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 LSM6P62312 80 aaKnown RBP19.36■□□□□ 0.69
TRIM28-202ENST00000341753 ADPRHL1Q8NDY3 354 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 SYT3Q9BQG1 590 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 WSB1Q9Y6I7 421 aa19.36■□□□□ 0.69
TRIM28-202ENST00000341753 TNFSF12O43508 249 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 SCAF4O95104 1147 aaKnown RBP19.35■□□□□ 0.69
TRIM28-202ENST00000341753 PATE4P0C8F1 98 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms