RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 FBXW12Q6X9E4 464 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 NTM-AS1Q6ZSK4 140 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 WDR86Q86TI4 376 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 RIMKLAQ8IXN7 391 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 C11orf72Q8NBR9 251 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 CHST4Q8NCG5 386 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 OR6K2Q8NGY2 324 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 LRRC29Q8WV35 223 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 LZICQ8WZA0 190 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 GTF2H4Q92759 462 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 RCN3Q96D15 328 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 SGTBQ96EQ0 304 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 UBE2E2Q96LR5 201 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF75AQ96N20 296 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 CAMK2N2Q96S95 79 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 OSBPL11Q9BXB4 747 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 NDEL1Q9GZM8 345 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 C12orf10Q9HB07 376 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 DDX19AQ9NUU7 478 aaKnown RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 FKBP14Q9NWM8 211 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 EURLQ9NYK6 297 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 MTFP1Q9UDX5 166 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 CES1P1Q9UKY3 287 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 HYOU1Q9Y4L1 999 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 HEY1Q9Y5J3 304 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 OR51B2Q9Y5P1 312 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 TSSC4Q9Y5U2 329 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 UBIAD1Q9Y5Z9 338 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 CREBBPQ92793 2442 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DMDP11532 3685 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 COL27A1Q8IZC6 1860 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 TRAV8-7A0A075B6U6 113 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 GOLGA8JA6NMD2 632 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 SYCE1LA8MT33 242 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 SEC14L6B5MCN3 397 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 F8VP50 259 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 GOLGA8MH3BSY2 632 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 hCG_2039718K7EN88 272 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 LIN7AO14910 233 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 RAD51BO15315 384 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 RBFOX2O43251 390 aaKnown RBP eCLIP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 GOLGA8HP0CJ92 632 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 ERGP11308 486 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 S100A1P23297 94 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DTYMKP23919 212 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 GNRHRP30968 328 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 EVI2BP34910 448 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 PFN2P35080 140 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 ARL2P36404 184 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CRATP43155 626 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 PPICP45877 212 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 HAAOP46952 286 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DNASE1L1P49184 302 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 PLTPP55058 493 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CCL23P55773 120 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 OR2B8PP59922 312 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 UBE2KP61086 200 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 UBE2NP61088 152 aaKnown RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 B2MP61769 119 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 RPS23P62266 143 aaKnown RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DR1Q01658 176 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 RPL18AQ02543 176 aaKnown RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 SLAMF1Q13291 335 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DGCR6Q14129 220 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 GNA13Q14344 377 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CHRFAM7AQ494W8 412 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 ORMDL2Q53FV1 153 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 ACTL10Q5JWF8 245 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 OR2T5Q6IEZ7 315 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DNAJC24Q6P3W2 148 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CEMP1Q6PRD7 247 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CYP4Z1Q86W10 505 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 RAB43Q86YS6 212 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CALHM1Q8IU99 346 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DAW1Q8N136 415 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 OR7G1Q8NGA0 311 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 OR2T29Q8NH02 315 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CDC26Q8NHZ8 85 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 COQ8AQ8NI60 647 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DDI1Q8WTU0 396 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 C15orf40Q8WUR7 153 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 DEDD2Q8WXF8 326 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 TMEM234Q8WY98 164 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CCDC127Q96BQ5 260 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 NARS2Q96I59 477 aaKnown RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 C8orf76Q96K31 380 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 BTN2A3PQ96KV6 586 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 SERPINB11Q96P15 392 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF382Q96SR6 550 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CGREF1Q99674 301 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 GABRG3Q99928 467 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 TIMM29Q9BSF4 260 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 COPS4Q9BT78 406 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 RSPO3Q9BXY4 272 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 PLEKHA1Q9HB21 404 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 FBXO8Q9NRD0 319 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 VAPAQ9P0L0 249 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 HMGXB4Q9UGU5 601 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 TRMT112Q9UI30 125 aaKnown RBP1.93□□□□□ -2.1
HMGB1-201ENST00000326004 ATPIF1Q9UII2 106 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms