RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 Q5BKY6 102 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 C20orf204Q6ZNR8 217 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 CASTOR1Q8WTX7 329 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 CCDC107Q8WV48 283 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 TMEM171Q8WVE6 324 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 MRPL37Q9BZE1 423 aaKnown RBP13.99□□□□□ -0.17
USP4-201ENST00000265560 PIGMQ9H3S5 423 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 PLSCR3Q9NRY6 295 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 A0A1B0GUH1 482 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 J3QW42 95 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 TMEM200AQ86VY9 491 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 C11orf53Q8IXP5 236 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 PRRT1Q99946 306 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 SLC34A2O95436 690 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 OR4E1P0C645 316 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 VAMP1P23763 118 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 CASP6P55212 293 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 IL24Q13007 206 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 KCNJ8Q15842 424 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 FAM76BQ5HYJ3 339 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 METTL11BQ5VVY1 283 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 UNQ6126/PRO20091Q6UXV3 157 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 SUMF2Q8NBJ7 301 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 OR5AP2Q8NGF4 316 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 NEUROG1Q92886 237 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 PPA2Q9H2U2 334 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 PCDHB16Q9NRJ7 776 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 HSF4Q9ULV5 492 aa13.98□□□□□ -0.17
USP4-201ENST00000265560 TRAV24A0A0B4J272 114 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 LRP5LA4QPB2 252 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 GSTT2P0CG29 244 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 IGSF11Q5DX21 431 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 FAM201AQ5SY85 155 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.97□□□□□ -0.17
USP4-201ENST00000265560 MGAT4CQ9UBM8 478 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 CENPEQ02224 2701 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 OR5H14A6NHG9 310 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 CREBL2O60519 120 aaPredicted RBP13.97□□□□□ -0.17
USP4-201ENST00000265560 GLRA1P23415 457 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 CA7P43166 264 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 FXYD4P59646 89 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 ELP2Q6IA86 826 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 PRR18Q8N4B5 295 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 TERB2Q8NHR7 220 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 TAAR3PQ9P1P4 343 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 ANXA10Q9UJ72 324 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 NAT1P18440 290 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 RCC1P18754 421 aaPredicted RBP13.97□□□□□ -0.17
USP4-201ENST00000265560 NKX6-1P78426 367 aaPredicted RBP13.97□□□□□ -0.17
USP4-201ENST00000265560 TMEM17Q86X19 198 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 TGIF2LYQ8IUE0 185 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 PRR7Q8TB68 274 aa13.97□□□□□ -0.17
USP4-201ENST00000265560 USP9XQ93008 2570 aaPredicted RBP13.97□□□□□ -0.17
USP4-201ENST00000265560 USF3Q68DE3 2245 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 CRYBG3Q68DQ2 2970 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 FAM172BPA6NC97 362 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 KNG1P01042 644 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 KITLGP21583 273 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 NFYAP23511 347 aaPredicted RBP13.96□□□□□ -0.17
USP4-201ENST00000265560 MPZP25189 248 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 RAG2P55895 527 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 KLF3P57682 345 aaPredicted RBP13.96□□□□□ -0.17
USP4-201ENST00000265560 ATXN7L3Q14CW9 347 aaPredicted RBP13.96□□□□□ -0.17
USP4-201ENST00000265560 TOMM40LQ969M1 308 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 ELMOD3Q96FG2 381 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 ZNF2Q9BSG1 426 aaPredicted RBP13.96□□□□□ -0.17
USP4-201ENST00000265560 JKAMPQ9P055 326 aa13.96□□□□□ -0.17
USP4-201ENST00000265560 CCSO14618 274 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 DEGS1O15121 323 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 GLRXP35754 106 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 SNRPD2P62316 118 aaKnown RBP13.96□□□□□ -0.18
USP4-201ENST00000265560 PPP1R1AQ13522 171 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 AADACL3Q5VUY0 350 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 MBNL2Q5VZF2 373 aaKnown RBP13.96□□□□□ -0.18
USP4-201ENST00000265560 ZNF626Q68DY1 528 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 OVCH2Q7RTZ1 564 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 SLC25A21Q9BQT8 299 aaPredicted RBP13.96□□□□□ -0.18
USP4-201ENST00000265560 C12orf4Q9NQ89 552 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 C1orf123Q9NWV4 160 aa13.96□□□□□ -0.18
USP4-201ENST00000265560 ZNF462Q96JM2 2506 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 PLSCR5A0PG75 271 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 HLA-AP01891 365 aaKnown RBP13.95□□□□□ -0.18
USP4-201ENST00000265560 OR5H8P0DN80 308 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 DHRS2Q13268 280 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 TMEM108Q6UXF1 575 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 SAXO1Q8IYX7 474 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 Q8NFD4 153 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 USB1Q9BQ65 265 aaKnown RBP13.95□□□□□ -0.18
USP4-201ENST00000265560 ANAPC10Q9UM13 185 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 MCRIP1C9JLW8 97 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 BET1O15155 118 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 SCTP09683 121 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 CBX5P45973 191 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 SEC61A1P61619 476 aaKnown RBP13.95□□□□□ -0.18
USP4-201ENST00000265560 DCAF12L2Q5VW00 463 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 CD276Q5ZPR3 534 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 WDR82Q6UXN9 313 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 FAM169BQ8N8A8 192 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 ST6GALNAC3Q8NDV1 305 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 GRPEL2Q8TAA5 225 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms