RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 CPT2P23786 658 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 IL13RA1P78552 427 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 ATPAF1Q5TC12 328 aaPredicted RBP22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 SLC36A1Q7Z2H8 476 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 LINC00596Q86U02 117 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 BIVMQ86UB2 503 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 SLC25A38Q96DW6 304 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 SDSLQ96GA7 329 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 TM2D1Q9BX74 207 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 DNTTIP1Q9H147 329 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 RHBDL2Q9NX52 303 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 MAB21L2Q9Y586 359 aa22.71■■□□□ 1.23
CHMP4B-201ENST00000217402 HSPB6O14558 160 aa22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 CHRM2P08172 466 aa22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 USF1P22415 310 aaPredicted RBP22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 MPV17LQ2QL34 196 aa22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 ATAD3CQ5T2N8 411 aa22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 PTX4Q96A99 478 aa22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 ATG5Q9H1Y0 275 aa22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 PATZ1Q9HBE1 687 aaKnown RBP22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 MIOXQ9UGB7 285 aa22.7■■□□□ 1.22
CHMP4B-201ENST00000217402 SIGLEC5O15389 551 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 IGHV2-5P01817 119 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 VEGFCP49767 419 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 MZT2AQ6P582 158 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 NLRC3Q7RTR2 1065 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 ZNF561Q8N587 486 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 TMEM185AQ8NFB2 350 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 OR8B3Q8NGG8 313 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 OR8B2Q96RD0 313 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 REG4Q9BYZ8 158 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 KAAG1Q9UBP8 84 aa22.69■■□□□ 1.22
CHMP4B-201ENST00000217402 IL2RGP31785 369 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 SEC61A1P61619 476 aaKnown RBP22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 NKAPLQ5M9Q1 402 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 FGFRL1Q8N441 504 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 NEIL1Q96FI4 390 aaPredicted RBP22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 MED30Q96HR3 178 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 C6orf62Q9GZU0 229 aaPredicted RBP22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 CHST6Q9GZX3 395 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 TRAV24A0A0B4J272 114 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 TMEM82A0PJX8 343 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 SLC33A1O00400 549 aaPredicted RBP22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 PSPNO60542 156 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 WNT2P09544 360 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 PITPNBP48739 271 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 LMO4P61968 165 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 UBE2NLQ5JXB2 153 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 SIGIRRQ6IA17 410 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 BRICD5Q6PL45 260 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 MAPK1IP1LQ8NDC0 245 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 MCFD2Q8NI22 146 aa22.68■■□□□ 1.22
CHMP4B-201ENST00000217402 AKAP9Q99996 3911 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 A0A096LNT2 108 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 METTL21EPA6NDL7 271 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A10PA6NDY2 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A18PA6NE21 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A16PA6NEW6 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A20PA6NIJ5 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A8PA6NJQ4 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A7PA6NKC0 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A22PA8MWA6 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A12PA8MX19 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A5PA8MXJ8 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A23PA8MXZ1 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 DVL1O14640 695 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 SOCS1O15524 211 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 HPGDSO60760 199 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A15PP0C7V4 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A13PP0C7W8 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A14PP0C7W9 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM90A24PP0C7X0 464 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 DYNC1I2Q13409 638 aaKnown RBP22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 MOGAT2Q3SYC2 334 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 RTN4RL2Q86UN3 420 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 CHST4Q8NCG5 386 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 CYYR1Q96J86 154 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 PPA2Q9H2U2 334 aa22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 SEBOXQ9HB31 216 aaPredicted RBP22.67■■□□□ 1.22
CHMP4B-201ENST00000217402 F5H0A9 414 aaPredicted RBP22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 RGS5O15539 181 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 ZNF737O75373 536 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 FCN3O75636 299 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 BLVRBP30043 206 aaPredicted RBP22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 CNPY1Q3B7I2 92 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 PAN3Q58A45 887 aaKnown RBP22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 RAB12Q6IQ22 244 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 C17orf107Q6ZR85 190 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 BPIFB2Q8N4F0 458 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 FAM89BQ8N5H3 189 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 SUMF2Q8NBJ7 301 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 OR56B1Q8NGI3 324 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 RAB39BQ96DA2 213 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 IFT22Q9H7X7 185 aa22.66■■□□□ 1.22
CHMP4B-201ENST00000217402 MYO9AB2RTY4 2548 aa22.65■■□□□ 1.22
CHMP4B-201ENST00000217402 NDUFB3O43676 98 aa22.65■■□□□ 1.22
CHMP4B-201ENST00000217402 EIF4EP06730 217 aaKnown RBP22.65■■□□□ 1.22
CHMP4B-201ENST00000217402 LMO1P25800 156 aa22.65■■□□□ 1.22
CHMP4B-201ENST00000217402 CMTM4Q8IZR5 234 aa22.65■■□□□ 1.22
CHMP4B-201ENST00000217402 ST8SIA4Q92187 359 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms